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Report for CCDS18800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18800.1 Public Mus musculus 4 Id3 23 108 98 CCDS HistoryNCBI Gene:15903Re-query CCDS DB by CCDS ID:18800.1Re-query CCDS DB by GeneID:15903See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18800.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008016.2 ENSMUSP00000008016.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008016.2Link to Ensembl Protein Viewer:ENSMUSP00000008016.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000008016Re-query CCDS DB by Protein ID:ENSMUSP00000008016
Original member NCBI NM_008321.2 NP_032347.1 Updated not alive Link to Nucleotide Sequence:NM_008321.2Link to Protein Sequence:NP_032347.1Re-query CCDS DB by Nucleotide ID:NM_008321Re-query CCDS DB by Protein ID:NP_032347
Current member NCBI NM_008321.3 NP_032347.1 Accepted alive Link to Nucleotide Sequence:NM_008321.3Link to Protein Sequence:NP_032347.1Re-query CCDS DB by Nucleotide ID:NM_008321Re-query CCDS DB by Protein ID:NP_032347Link to BLAST:NP_032347.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032347.1 119 P41133 119 100% 0 0

Chromosomal Locations for CCDS 18800.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136143879 136144178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136144294 136144353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGAAGGCGCTGAGCCCGGTGCGCGGCTGCTACGAGGCGGTGTGCTGCCTGTCGGAACGTAGCCTGGCCA
TTGCGCGAGGCCGCGGTAAGAGCCCGTCGACCGAGGAGCCTCTTAGCCTCTTGGACGACATGAACCACTG
CTACTCGCGCCTGCGGGAACTGGTGCCGGGAGTCCCGCGAGGCACTCAGCTTAGCCAGGTGGAAATCCTG
CAGCGTGTCATAGACTACATCCTCGACCTTCAGGTGGTCCTGGCAGAGCCGGCGCCTGGACCCCCGGACG
GTCCGCATCTCCCGATCCAGACAGCTGAGCTCACTCCGGAACTTGTGATCTCCAAGGACAAGAGGAGCTT
TTGCCACTGA

Translation (119 aa):
MKALSPVRGCYEAVCCLSERSLAIARGRGKSPSTEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEIL
QRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELTPELVISKDKRSFCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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