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Report for CCDS37716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37716.1 Public Mus musculus 17 Calm2 23 108 98 CCDS HistoryNCBI Gene:12314Re-query CCDS DB by CCDS ID:37716.1Re-query CCDS DB by GeneID:12314See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37716.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040440.6 ENSMUSP00000048857.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040440.6Link to Ensembl Protein Viewer:ENSMUSP00000048857.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040440Re-query CCDS DB by Protein ID:ENSMUSP00000048857
Original member Current member NCBI NM_007589.5 NP_031615.1 Accepted alive Link to Nucleotide Sequence:NM_007589.5Link to Protein Sequence:NP_031615.1Re-query CCDS DB by Nucleotide ID:NM_007589Re-query CCDS DB by Protein ID:NP_031615Link to BLAST:NP_031615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031615.1 149 P0DP27 149 100% 0 0

Chromosomal Locations for CCDS 37716.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 87434027 87434055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87435076 87435211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87435604 87435710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87435791 87435934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87442696 87442726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87446793 87446795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGCTGACCAACTGACTGAAGAGCAGATTGCAGAGTTCAAAGAAGCTTTCTCACTATTTGACAAGGACG
GGGATGGGACAATAACAACAAAGGAGCTGGGGACAGTGATGAGGTCCCTGGGGCAGAACCCCACAGAAGC
AGAACTGCAGGACATGATCAATGAAGTAGATGCGGATGGTAATGGCACAATTGATTTCCCTGAATTTCTG
ACAATGATGGCAAGAAAAATGAAAGACACAGACAGTGAAGAAGAGATTAGAGAAGCATTCCGTGTGTTTG
ATAAGGATGGCAATGGCTATATTAGTGCAGCAGAGCTTCGCCATGTGATGACAAACCTTGGCGAGAAGTT
AACAGATGAAGAGGTCGATGAGATGATCAGGGAAGCAGACATTGACGGGGACGGTCAGGTAAACTACGAA
GAGTTTGTACAAATGATGACAGCGAAGTGA

Translation (149 aa):
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL
TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE
EFVQMMTAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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