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Report for CCDS24025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24025.1 Public Mus musculus 10 Rexo1 23 108 98 CCDS HistoryNCBI Gene:66932Re-query CCDS DB by CCDS ID:24025.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057910.15 ENSMUSP00000049705.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057910.15Link to Ensembl Protein Viewer:ENSMUSP00000049705.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057910Re-query CCDS DB by Protein ID:ENSMUSP00000049705
Original member NCBI NM_025852.3 NP_080128.2 Updated not alive Link to Nucleotide Sequence:NM_025852.3Link to Protein Sequence:NP_080128.2Re-query CCDS DB by Nucleotide ID:NM_025852Re-query CCDS DB by Protein ID:NP_080128
Current member NCBI NM_025852.4 NP_080128.2 Accepted alive Link to Nucleotide Sequence:NM_025852.4Link to Protein Sequence:NP_080128.2Re-query CCDS DB by Nucleotide ID:NM_025852Re-query CCDS DB by Protein ID:NP_080128Link to BLAST:NP_080128.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080128.2 1213 Q7TT28-1 1213 100% 0 0

Chromosomal Locations for CCDS 24025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80542393 80542481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80542565 80542824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80542908 80543023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80543301 80543411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80543647 80543720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80544003 80544116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80544283 80544420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80544760 80544873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80545463 80545586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80545876 80546007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80546302 80546465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80547773 80547986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80548432 80548533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80549333 80551065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80561264 80561420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3642 nt):
ATGCTACGTTCTACCGGCTTCTTCCGCTCCATCGACTGCCCATACTGGGCGGGAGCTCCCGGGGGGCCTT
GCCGGCGGCCCTACTGCCACTTCCGGCACCGCGGAGCTCGGGGTCCCGGCGCTCCCGGTAGCGGCGGCGC
AGCATCTCCTGCATCAGGGCTTGGCTATGACCCGTACAACCCAGAGCTGCCCCAGCCTCCTGTGCAGAGG
GAGAATGGTGCTCTGGGTCAGGGTGATGGCATGCTGGAGCTGGAGCTGGTCAACCAGGCCATCGAGGCTG
TGCGCGGCGAGGTGGAGCTGGAACAGAGGCGCTACCAGGAGCTCCTCGAGACTGCACGGGGGCACAGTGC
TGGGCCTTCAGCCCTGGCGCCTTGCAGCCCTGCCACAAGCATAGATGACGATGACACCTTCTCATTGGCC
CTAACTTACACGCCGGGTGGCCTGCTGAGCCCGGATGCTGCCTACCAGCCCACCCCACTGGCTGTCCCTG
CCGAGCCAGGGCACAAGTACTCACTGGCCCCTTCAGACAGGAGTCAGGGCAGAGCTGCAGGAGGTGCTGG
TGCCCTGGAGTATGTCCCCAAGGCTGTGGGCCAGCCGCGCCGCTGTGGCCGCCCTGTGTCTGGTGGCAAG
TATGTGGTGGATAGTTCAAAACCTTCAACAGATCTAGAGTATGACCCACTGTCCAACTACTCAGCCCGGC
ACCTTGGCAGGGCCAGTGCTAGGGATGAGAGGGCCACCAAGAGACCGCGGGGCTCCAGGGGTGCTGAGCC
ATACACTCCTGCCCTCAAGAAGCCCTGTGACCCCTTCGGTGGCTGTGAGGCCAGGTTCTCAGACTCAGAA
GATGATGTGACCAGCCCCCCAAAGGCTGATGTTAGCAGCCCCAAGGCTGGAGCTGACCCTGAAAGCAAGG
CACCTGGGAAGCCTGTCTCCAAGGAGGGCAGAGAGCATGAGGACGGTGGCCTGCGGGGCACCAAGGAGAT
GGCTGTGCAGTATGACGTGGAAGACCTTGGGCAGCCCCCCAAAGCACCAGACACAGTGTCTGTGGTCAAG
CCTGGCTCCCCAGCCAGGGCCTCTCAAGATGCTAGGGTCCCCAAGGAAGGTAAAGCCAAAAAGAAGAAAA
GTGGGACATCAGCCAGCCTCAGCCACAAGGACAAGGTTCGCAAGAAAGACAAAAAGAAAGAGAAAGACCC
AGCCAGGCCCCGAGGGAAGGAAAAGGTGTGTACGGACAAGAAGAAGCTGCCAGCCAGTAACCCCAGGGGG
AAGGCCCAGGGGCCTGAAGGGACCAAGAAAAAGCCATCCTCTGCGACCACAGTGGCCAGCTCAGGGAAAG
GGGGGTCAGGCCGCCCCTCCAGCACGGGACCTCAGGACTCTGGGCCTGGTCCCCATGCACCACTGGCCTG
GAAGGCTGGTAGTGCAAAGAAGATGTCATCGGGAAAGTTGGTGGAACGCAAGGCCCGCTCCCTGGATGAA
GGAGCCCCCCAGGACACCCCTAAGCTCAAGAAACGGGCCCTGAGCCATGCTGAACTATTTGGGGATGAGA
GTGAGGAGGAGGACTCAAGCCTGGGAGCGGGAGCACCCCGGGTCTGGCCCCCGACCCTGCCCAGCCTTAG
CTCAGACTCAGAATCAGACTCCGACTCCAGCCTGGGCCTGGACGAGACAAAGGTGCCCAAGCGTCTCAAG
GCCGCGCCGCCCGCATCCCCCGTGCCGCCCTCCCCATTGTCCTCCTCCTCCTCGTCCTCGGGAGCCAGCC
AGTGTGCAGAGGAGGATGTGGACTACTCGGCTCTGGAGAAGGAGGTGGACTTCGATGTGGACCCTATGGA
GGAGTGCCTGCGGATCTTCAACGAGTCCACCAGCGTGAAGACAGAGGACAAGGGCCGGCTGGCCCGGCAG
CCACCCAAGGAGAAGGCTGAGGAGAAGACACATGCGGGCCTGACCACTTTGTTCCCGGGGCAGAAGAGGA
GGGTCTCACACCTTTGCAAGCCAGGCAAGGAGTCAGAGGCCCCAAAGAGGACCCCCGTGGCTCCCCCAGC
ACGCCCCCCGACTGCTCAGGAGGTGTGCTACCGGCGAGCACAGCTAGCACAGAGGGACTCGGCCAGTTGG
CTACAGGCCGCCCCGCGGCCAACAGAGAGGCTCTCCTCCGTGCACATCTCAGCGCCTGGGGAGAAGAGGA
GGATTGCTCACGTACCCAACCCCCGACTGGCTGCCGCCCCCACAGGTGCCAAGAGGGCGCTCTCTGCCAG
CAGCAGCCAGGCGTCCCACGGCCCCGAACCTGGCAGCCAGCCACTGAAGACACGCACATTGTCAGGGATG
GCATCTAAGACAACCACCACCGTCACCCCCAAGCGCATCGCCCACAGCCCATCACTCCAGAGTCTAAAGA
AGCCTGTTATCCCAAAAGAATTTGGCGGCAAGGTTCCCACTGTGGTCCGCCAGCGCTATCTCAACCTGTT
CATTGAGGAGTGTCTCAAGTTCTGTTCGTCCAACCAGGAGGCCATCGAGAAGGCCCTGAATGAGGAAAAG
GTGGCGTATGACCGCAGTCCCAGCAAGAACATATACCTGAACGTGGCCGTGAACACCCTTAAGAAGCTAA
GGGGCCTGGTCCCCAACACCGTGCCCAACCTCAGCAAAGCCAGTGGCCGCAGGGTTGTGTCTCATGAGGT
TGTACTGGGGGGCAAATTGGCAGCCAAAACCAGCTTCTCATTGAGCCGCCCCAGCAGTCCGCGGGTAGAG
GAGCTGAAAGGGACTGCCCTGTACAGCCGCCTCAGGGAGTACCTGCTCACTCAGGAGCAGCTGAAGGAGA
ATGGCTACCCCTTCCCCCACCCAGAGCGCCCAGGGGGTGCCATCATCTTCACAGCCGAGGAGAAGAAACC
CAAGGACCCCTCCTGCAGAATTTGCTGTCGCTGTGGCACAGAGTACCTTGTGTCCTCCTCGGGCCGCTGC
GTGCGCAGTGAGGAGTGTTACTACCACTGGGGGCGGCTGCGGCGGAATCGAGTGGCTGGGGGCTGGGAGA
CCCAGTATATGTGCTGCTCAGCTGCCGTCGGCTCTGTAGGCTGTCAGGTTGCCAAGCAACACGTGCAGGA
CGGCCGGAAGGAGAACCTGGAGGGCTTTGTGCGCACCTTCCAGAAGGAGCTGCCTGAAGATGCCCATGCA
GGGGTCTTTGCCCTCGACTGTGAGATGTCCTACACTACATATGGCCTGGAGCTGACCCGAGTCACAGTTG
TGGACACAGACATGCAGGTCGTGTATGACACCTTTGTCAAGCCTGACAATGAAGTTGTTGACTACAACAC
CAGGTTCTCAGGGGTGACAGAGGCTGACCTTGTGGACACGAGCATCACGCTGCGGGACGTGCAGGCTGTC
TTGCTGAGCATGTTCAGCGCCGACACCATCCTCATCGGACACAGCCTGGAGAGCGACCTGCTGGCTCTCA
AGGTCATCCACGGCACAGTGGTGGACACGTCTGTGCTTTTCCCACATCGCCTGGGCCTGCCCTATAAGCG
CTCCCTGCGGAACCTCATGGCTGACTACCTCAGACAGATCATCCAAGACAATGTGGACGGGCACAGCTCC
AGTGAGGATGCCAGTGCCTGCATGCACCTTGTCATCTGGAAGATCCGAGAAGATGCCAAGACCAAGCGAT
GA

Translation (1213 aa):
MLRSTGFFRSIDCPYWAGAPGGPCRRPYCHFRHRGARGPGAPGSGGAASPASGLGYDPYNPELPQPPVQR
ENGALGQGDGMLELELVNQAIEAVRGEVELEQRRYQELLETARGHSAGPSALAPCSPATSIDDDDTFSLA
LTYTPGGLLSPDAAYQPTPLAVPAEPGHKYSLAPSDRSQGRAAGGAGALEYVPKAVGQPRRCGRPVSGGK
YVVDSSKPSTDLEYDPLSNYSARHLGRASARDERATKRPRGSRGAEPYTPALKKPCDPFGGCEARFSDSE
DDVTSPPKADVSSPKAGADPESKAPGKPVSKEGREHEDGGLRGTKEMAVQYDVEDLGQPPKAPDTVSVVK
PGSPARASQDARVPKEGKAKKKKSGTSASLSHKDKVRKKDKKKEKDPARPRGKEKVCTDKKKLPASNPRG
KAQGPEGTKKKPSSATTVASSGKGGSGRPSSTGPQDSGPGPHAPLAWKAGSAKKMSSGKLVERKARSLDE
GAPQDTPKLKKRALSHAELFGDESEEEDSSLGAGAPRVWPPTLPSLSSDSESDSDSSLGLDETKVPKRLK
AAPPASPVPPSPLSSSSSSSGASQCAEEDVDYSALEKEVDFDVDPMEECLRIFNESTSVKTEDKGRLARQ
PPKEKAEEKTHAGLTTLFPGQKRRVSHLCKPGKESEAPKRTPVAPPARPPTAQEVCYRRAQLAQRDSASW
LQAAPRPTERLSSVHISAPGEKRRIAHVPNPRLAAAPTGAKRALSASSSQASHGPEPGSQPLKTRTLSGM
ASKTTTTVTPKRIAHSPSLQSLKKPVIPKEFGGKVPTVVRQRYLNLFIEECLKFCSSNQEAIEKALNEEK
VAYDRSPSKNIYLNVAVNTLKKLRGLVPNTVPNLSKASGRRVVSHEVVLGGKLAAKTSFSLSRPSSPRVE
ELKGTALYSRLREYLLTQEQLKENGYPFPHPERPGGAIIFTAEEKKPKDPSCRICCRCGTEYLVSSSGRC
VRSEECYYHWGRLRRNRVAGGWETQYMCCSAAVGSVGCQVAKQHVQDGRKENLEGFVRTFQKELPEDAHA
GVFALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDTSITLRDVQAV
LLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSS
SEDASACMHLVIWKIREDAKTKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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