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Report for CCDS19275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19275.1 Public Mus musculus 5 Med28 23 108 98 CCDS HistoryNCBI Gene:66999Re-query CCDS DB by CCDS ID:19275.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156481.7 ENSMUSP00000115882.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156481.7Link to Ensembl Protein Viewer:ENSMUSP00000115882.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156481Re-query CCDS DB by Protein ID:ENSMUSP00000115882
Original member Current member NCBI NM_025895.4 NP_080171.1 Accepted alive Link to Nucleotide Sequence:NM_025895.4Link to Protein Sequence:NP_080171.1Re-query CCDS DB by Nucleotide ID:NM_025895Re-query CCDS DB by Protein ID:NP_080171Link to BLAST:NP_080171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080171.1 178 Q920D3 178 100% 0 0

Chromosomal Locations for CCDS 19275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 45520326 45520484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45522436 45522502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45523422 45523534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45525153 45525350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGGCGGCGTCCCTGGGAGGGATGTTCACTGGGCAGCCTCCAGGTCCCCCGCCGCCGCCGCCCGGGCTCC
CAGGCCAGGCGTCGCTTCTGCAAGCAGCCCCTGGGGCCCCGAGACCATCTAACAGCACTTTGGTGGACGA
GTTGGAGTCATCCTTCGAGGCTTGCTTTGCTTCCCTTGTGAGTCAGGATTATGTCAATGGGACTGATCAG
GAAGAAATTCGAACTGGTGTTGATCAGTGTATCCAGAAGTTTTTGGACATTGCAAGACAGACAGAATGTT
TTTTCCTACAAAAAAGGTTGCAGTTATCTGTCCAGAAACCAGATCAAGTTATCAAAGAGGATGTCTCGGA
ACTAAGGAGTGAACTGCAGCGGAAGGATGCGCTGGTCCAGAAGCACTTGACAAAGCTGAGGCATTGGCAG
CAGGTGCTGGAGGACATCAATGTGCAGCACAAGAAGCCGGCTGACATGCCTCAGGGATCCTTGGCCTTCC
TCGAGCAGGCGTCTGCCAACATTCCTGCACCTCTGAAGCAGACCTAA

Translation (178 aa):
MAASLGGMFTGQPPGPPPPPPGLPGQASLLQAAPGAPRPSNSTLVDELESSFEACFASLVSQDYVNGTDQ
EEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKEDVSELRSELQRKDALVQKHLTKLRHWQ
QVLEDINVQHKKPADMPQGSLAFLEQASANIPAPLKQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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