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Report for CCDS25318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25318.1 Public Mus musculus 11 Mrpl45 23 108 98 CCDS HistoryNCBI Gene:67036Re-query CCDS DB by CCDS ID:25318.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019026.9 ENSMUSP00000019026.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019026.9Link to Ensembl Protein Viewer:ENSMUSP00000019026.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000019026Re-query CCDS DB by Protein ID:ENSMUSP00000019026
Original member Current member NCBI NM_025927.4 NP_080203.1 Accepted alive Link to Nucleotide Sequence:NM_025927.4Link to Protein Sequence:NP_080203.1Re-query CCDS DB by Nucleotide ID:NM_025927Re-query CCDS DB by Protein ID:NP_080203Link to BLAST:NP_080203.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080203.1 306 Q9D0Q7 306 100% 0 0

Chromosomal Locations for CCDS 25318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97315874 97315939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97316747 97316924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97321443 97321560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97323851 97323949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97325709 97325757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97326782 97326931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97328086 97328259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97328482 97328568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCGGCCCCCGTACCTCGGGGCTTGTCCTCCTTATACAGGACTTTGGGATGGTGGTCTCGGCAGCCCA
TTCTGGTGACTCAGTCCACAACTGTAGTTCAAGTTAAAACCAAAAGCCGTTTTAGACCCCCAACTCCTGA
ACCCAAGTACAAAACAGAGAAGGAGTTTTTGGAGTATGCCAGGAAAGCGGGATTGGTCATTCCACAGGAA
CGGTTGGAGCGCCCTATACATTTGGCCTGTACAGCTGGTATATTTGATCCCTATGTTCCACCAGAGGGTG
ATGCTCGAATGTCATCTCTTTCAAAGGAAGGATTGACGCAGAGAACTGAGCGATTGAGAAAGAATGCGGC
ATCACAGCTGGCAATCCGAAAGATAAGAGAATTTGATGCAAATTTTAAAACAAAAGACTTCCCTGAAAAA
GCTAAGGATATTTTCATTGAAGCTCACCTTTGTCTAAACAACTCAGACCATGACCGGCTTCATACCTTGG
TAACCGAACACTGTTTTCCGGACATGGTCTGGGACCTCAAGTACAAGACTGTACGCTGGGGCTTTGTGGA
ATCTCTAGAGCCAGCCCAAGTGGTTCATGTCCGTTGCTCAGGCCTGGTGAACCAGAGCAACATGTATGGC
CAGGTCACTGTGCGCCTACACACTCGGCAGACTTTGGCCATTTATGATCGGTTTGGCAGATTGATGTATG
GACAGGAAGATGTGCCCAAGGATGTCCTGGAATATGTGGTGTTTGAAAGACACTTGATGAACCCGTATGG
GAGCTGGAGAATGCATGCCAAGATTGTGCCCGCGTGGGCACCCCCTAAGCAGCCCATCCTCAAGACCTTG
ATGATTCCTGGTCCTCAGCTGAAACCCTGGGAGGAGTACGAAGAGACTCAAGGGGAGGCCCAGAAGCCTC
AGCTAGCCTGA

Translation (306 aa):
MAAPVPRGLSSLYRTLGWWSRQPILVTQSTTVVQVKTKSRFRPPTPEPKYKTEKEFLEYARKAGLVIPQE
RLERPIHLACTAGIFDPYVPPEGDARMSSLSKEGLTQRTERLRKNAASQLAIRKIREFDANFKTKDFPEK
AKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYG
QVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWRMHAKIVPAWAPPKQPILKTL
MIPGPQLKPWEEYEETQGEAQKPQLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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