NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84391.1 Public Mus musculus 18 Chmp1b 23 108 98 CCDS HistoryNCBI Gene:67064Re-query CCDS DB by CCDS ID:84391.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210564.2 ENSMUSP00000147285.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210564.2Link to Ensembl Protein Viewer:ENSMUSP00000147285.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210564Re-query CCDS DB by Protein ID:ENSMUSP00000147285
Original member Current member NCBI NM_024190.2 NP_077152.1 Accepted alive Link to Nucleotide Sequence:NM_024190.2Link to Protein Sequence:NP_077152.1Re-query CCDS DB by Nucleotide ID:NM_024190Re-query CCDS DB by Protein ID:NP_077152Link to BLAST:NP_077152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077152.1 199 Q99LU0 199 100% 0 0

Chromosomal Locations for CCDS 84391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67205501 67206100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGTCCAACATGGAGAAGCATCTGTTCAACCTGAAATTCGCGGCCAAAGAACTGAACCGGAGTTCCAAAA
AATGCGACAAGGAAGAAAAGGCCGAAAAGGCCAAAATTAAAAAGGCCATTCAGAAGGGCAACATGGAAGT
TGCGAGGATTCACGCCGAAAATGCCATCCGCCAGAAGAATCAAGGGGTGAACTTCTTGAGAATGAGTGCA
CGAGTGGATGCGGTGGCGGCCCGTGTCCAGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCATGGCGG
GTGTGGTTAAGTCGATGGACGCGACGTTGAAAAGTATGAATCTGGAGAAGATCTCCGCTTTGATGGACAA
ATTCGAACACCAGTTCGAGACTCTGGACGTCCAGACGCAGCAAATGGAAGACACAATGAGCAGCACGACG
ACGCTGACCACTCCCCAGAACCAGGTGGATATGCTGCTCCAGGAAATGGCAGATGAGGCGGGCCTCGATC
TCAACATGGAGCTGCCTCAGGGCCAGACCGGTTCCGTGGGAACGAGCGTGGCTTCGGCTGAGCAAGATGA
ACTGTCCCAGAGACTGGCCCGCCTTCGGGATCAAGTCTGA

Translation (199 aa):
MSNMEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSA
RVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTT
TLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRLARLRDQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH