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Report for CCDS27573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27573.1 Public Mus musculus 15 Dgat1 23 108 98 CCDS HistoryNCBI Gene:13350Re-query CCDS DB by CCDS ID:27573.1Re-query CCDS DB by GeneID:13350See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023214.10 ENSMUSP00000023214.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023214.10Link to Ensembl Protein Viewer:ENSMUSP00000023214.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023214Re-query CCDS DB by Protein ID:ENSMUSP00000023214
Original member NCBI NM_010046.3 NP_034176.1 Updated not alive Link to Nucleotide Sequence:NM_010046.3Link to Protein Sequence:NP_034176.1Re-query CCDS DB by Nucleotide ID:NM_010046Re-query CCDS DB by Protein ID:NP_034176
Current member NCBI NM_010046.4 NP_034176.1 Accepted alive Link to Nucleotide Sequence:NM_010046.4Link to Protein Sequence:NP_034176.1Re-query CCDS DB by Nucleotide ID:NM_010046Re-query CCDS DB by Protein ID:NP_034176Link to BLAST:NP_034176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034176.1 498 Q9Z2A7 498 100% 0 0

Chromosomal Locations for CCDS 27573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76502236 76502388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76502492 76502554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76502644 76502731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76502819 76502884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76502959 76503071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76503154 76503198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76503274 76503315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76503390 76503428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76503518 76503621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76503706 76503780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76503865 76503972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76504115 76504220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76504349 76504401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76504486 76504571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76504666 76504706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76506566 76506653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76511555 76511781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGGCGACCGCGGAGGCGCGGGAAGCTCTCGGCGTCGGAGGACCGGCTCGCGGGTTTCCGTCCAGGGTG
GTAGTGGGCCCAAGGTAGAAGAGGACGAGGTGCGAGACGCGGCTGTGAGCCCCGACTTGGGCGCCGGGGG
TGACGCGCCGGCTCCGGCTCCGGCTCCAGCCCATACCCGGGACAAAGACGGGCGGACCAGCGTGGGCGAC
GGCTACTGGGATCTGAGGTGCCATCGTCTGCAAGATTCTTTGTTCAGCTCAGACAGTGGTTTCAGCAATT
ATCGTGGTATCCTGAATTGGTGTGTGGTGATGCTGATCCTGAGTAATGCAAGGTTATTTTTAGAGAACCT
TATCAAGTATGGCATCCTGGTGGATCCTATCCAGGTGGTGTCTCTGTTTCTGAAGGACCCCTACAGCTGG
CCTGCCCCATGCGTGATTATTGCATCCAATATTTTTGTTGTGGCTGCATTTCAGATTGAGAAGCGCCTGG
CAGTGGGTGCCCTGACAGAGCAGATGGGGCTGCTGCTACATGTGGTTAACCTGGCCACAATCATCTGCTT
CCCAGCAGCTGTGGCCTTACTGGTTGAGTCTATCACTCCAGTGGGTTCCGTGTTTGCTCTGGCATCATAC
TCCATCATGTTCCTCAAGCTTTATTCCTACCGGGATGTCAACCTGTGGTGCCGCCAGCGAAGGGTCAAGG
CCAAAGCTGTCTCTACAGGGAAGAAGGTCAGTGGGGCTGCTGCCCAGCAAGCTGTGAGCTATCCAGACAA
CCTGACCTACCGAGATCTCTATTACTTCATCTTTGCTCCTACTTTGTGTTATGAACTCAACTTTCCTCGG
TCCCCCCGAATACGAAAGCGCTTTCTGCTACGACGAGTTCTTGAGATGCTCTTTTTTACCCAGCTTCAAG
TGGGGCTGATCCAACAGTGGATGGTCCCTACTATCCAGAACTCCATGAAGCCCTTCAAGGATATGGACTA
TTCACGGATCATTGAGCGTCTCTTAAAGCTGGCGGTCCCCAACCATCTGATCTGGCTTATCTTCTTCTAT
TGGTTTTTCCACTCCTGTCTCAATGCTGTGGCAGAGCTTCTGCAGTTTGGAGACCGCGAGTTCTACAGAG
ATTGGTGGAATGCTGAGTCTGTCACCTACTTTTGGCAGAACTGGAATATCCCCGTGCACAAGTGGTGCAT
CAGACACTTCTACAAGCCTATGCTCAGACATGGCAGCAGCAAATGGGTGGCCAGGACAGGAGTATTTTTG
ACCTCAGCCTTCTTCCATGAGTACCTAGTGAGCGTTCCCCTGCGGATGTTCCGCCTCTGGGCATTCACAG
CCATGATGGCTCAGGTCCCACTGGCCTGGATTGTGGGCCGATTCTTCCAAGGGAACTATGGCAATGCAGC
TGTGTGGGTGACACTCATCATTGGGCAACCGGTGGCTGTGCTCATGTATGTCCACGACTACTACGTGCTC
AACTACGATGCCCCAGTGGGGGTCTGA

Translation (498 aa):
MGDRGGAGSSRRRRTGSRVSVQGGSGPKVEEDEVRDAAVSPDLGAGGDAPAPAPAPAHTRDKDGRTSVGD
GYWDLRCHRLQDSLFSSDSGFSNYRGILNWCVVMLILSNARLFLENLIKYGILVDPIQVVSLFLKDPYSW
PAPCVIIASNIFVVAAFQIEKRLAVGALTEQMGLLLHVVNLATIICFPAAVALLVESITPVGSVFALASY
SIMFLKLYSYRDVNLWCRQRRVKAKAVSTGKKVSGAAAQQAVSYPDNLTYRDLYYFIFAPTLCYELNFPR
SPRIRKRFLLRRVLEMLFFTQLQVGLIQQWMVPTIQNSMKPFKDMDYSRIIERLLKLAVPNHLIWLIFFY
WFFHSCLNAVAELLQFGDREFYRDWWNAESVTYFWQNWNIPVHKWCIRHFYKPMLRHGSSKWVARTGVFL
TSAFFHEYLVSVPLRMFRLWAFTAMMAQVPLAWIVGRFFQGNYGNAAVWVTLIIGQPVAVLMYVHDYYVL
NYDAPVGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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