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Report for CCDS42856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42856.1 Public Homo sapiens 20 SSTR4 24 110 108 CCDS HistoryNCBI Gene:6754Re-query CCDS DB by CCDS ID:42856.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42856.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255008.5 ENSP00000255008.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255008.5Link to Ensembl Protein Viewer:ENSP00000255008.3Re-query CCDS DB by Nucleotide ID:ENST00000255008Re-query CCDS DB by Protein ID:ENSP00000255008
Original member Current member NCBI NM_001052.4 NP_001043.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001052.4Link to Protein Sequence:NP_001043.2Re-query CCDS DB by Nucleotide ID:NM_001052Re-query CCDS DB by Protein ID:NP_001043Link to BLAST:NP_001043.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001043.2 388 P31391 388 100% 0 0

Chromosomal Locations for CCDS 42856.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23035484 23036650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGAGCGCCCCCTCGACGCTGCCCCCCGGGGGCGAGGAAGGGCTGGGGACGGCCTGGCCCTCTGCAGCCA
ATGCCAGTAGCGCTCCGGCGGAGGCGGAGGAGGCGGTGGCGGGGCCCGGGGACGCGCGGGCGGCGGGCAT
GGTCGCTATCCAGTGCATCTACGCGCTGGTGTGCCTGGTGGGGCTGGTGGGCAACGCCCTGGTCATCTTC
GTGATCCTTCGCTACGCCAAGATGAAGACGGCTACCAACATCTACCTGCTCAACCTGGCCGTAGCCGACG
AGCTCTTCATGCTGAGCGTGCCCTTCGTGGCCTCGTCGGCCGCCCTGCGCCACTGGCCCTTCGGCTCCGT
GCTGTGCCGCGCGGTGCTCAGCGTCGACGGCCTCAACATGTTCACCAGCGTCTTCTGTCTCACCGTGCTC
AGCGTGGACCGCTACGTGGCCGTGGTGCACCCTCTGCGCGCGGCGACCTACCGGCGGCCCAGCGTGGCCA
AGCTCATCAACCTGGGCGTGTGGCTGGCATCCCTGTTGGTCACTCTCCCCATCGCCATCTTCGCAGACAC
CAGACCGGCTCGCGGCGGCCAGGCCGTGGCCTGCAACCTGCAGTGGCCACACCCGGCCTGGTCGGCAGTC
TTCGTGGTCTACACTTTCCTGCTGGGCTTCCTGCTGCCCGTGCTGGCCATTGGCCTGTGCTACCTGCTCA
TCGTGGGCAAGATGCGCGCCGTGGCCCTGCGCGCTGGCTGGCAGCAGCGCAGGCGCTCGGAGAAGAAAAT
CACCAGGCTGGTGCTGATGGTCGTGGTCGTCTTTGTGCTCTGCTGGATGCCTTTCTACGTGGTGCAGCTG
CTGAACCTCTTCGTGACCAGCCTTGATGCCACCGTCAACCACGTGTCCCTTATCCTTAGCTATGCCAACA
GCTGCGCCAACCCCATTCTCTATGGCTTCCTCTCCGACAACTTCCGCCGATTCTTCCAGCGGGTTCTCTG
CCTGCGCTGCTGCCTCCTGGAAGGTGCTGGAGGTGCTGAGGAGGAGCCCCTGGACTACTATGCCACTGCT
CTCAAGAGCAAAGGTGGGGCAGGGTGCATGTGCCCCCCACTCCCCTGCCAGCAGGAAGCCCTGCAACCAG
AACCCGGCCGCAAGCGCATCCCCCTCACCAGGACCACCACCTTCTGA

Translation (388 aa):
MSAPSTLPPGGEEGLGTAWPSAANASSAPAEAEEAVAGPGDARAAGMVAIQCIYALVCLVGLVGNALVIF
VILRYAKMKTATNIYLLNLAVADELFMLSVPFVASSAALRHWPFGSVLCRAVLSVDGLNMFTSVFCLTVL
SVDRYVAVVHPLRAATYRRPSVAKLINLGVWLASLLVTLPIAIFADTRPARGGQAVACNLQWPHPAWSAV
FVVYTFLLGFLLPVLAIGLCYLLIVGKMRAVALRAGWQQRRRSEKKITRLVLMVVVVFVLCWMPFYVVQL
LNLFVTSLDATVNHVSLILSYANSCANPILYGFLSDNFRRFFQRVLCLRCCLLEGAGGAEEEPLDYYATA
LKSKGGAGCMCPPLPCQQEALQPEPGRKRIPLTRTTTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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