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Report for CCDS22451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22451.1 Public Mus musculus 8 Mgat4d 23 108 98 CCDS HistoryNCBI Gene:67555Re-query CCDS DB by CCDS ID:22451.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038692.5 ENSMUSP00000041629.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038692.5Link to Ensembl Protein Viewer:ENSMUSP00000041629.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038692Re-query CCDS DB by Protein ID:ENSMUSP00000041629
Original member Current member NCBI NM_026233.2 NP_080509.2 Accepted alive Link to Nucleotide Sequence:NM_026233.2Link to Protein Sequence:NP_080509.2Re-query CCDS DB by Nucleotide ID:NM_026233Re-query CCDS DB by Protein ID:NP_080509Link to BLAST:NP_080509.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080509.2 373 Q9D4R2-1 373 100% 0 0

Chromosomal Locations for CCDS 22451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83348485 83348578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83354714 83354872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83355676 83355813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83358021 83358154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83359918 83359964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83362347 83362451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83365664 83365739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83368089 83368203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83368966 83369096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83371609 83371716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83379231 83379245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGAAGGCCAAGAACGTTAACTTGCTCTTCGCCTTCGTTGCCGTCCTGCTCTTTGGTTTCTCGTGTTTCT
GCATCTCCAGGATGAACCAAACCAATAATCAACTAATTAACTGCAGAAACCACGTTTTGGAGTTTAAAGA
AATTATGCTCCGTTTAAAAAACAAAAGTGAAAATCATCACCAAGACCTAATGCAAGTCTTGTATCAAATG
AAGCGTAAAGCTGCCCACACAACAAGATCATCAGGGAACTTCCTTGAGAAGAAGGGGAGCATATTGAGTC
AGCATGAAACACTTCCTAACCAATTTGAAGTCTTAAAGTACTTCCTTCCTCATCTAAGGACAGCAGGGAA
ACTTTACCCAGCTATAGCCACTAGCAAAGGGAGAGCAGGCGTTTCCTTTGCACTGGGAATCTCCACCATT
AACAGAGGGAACCACACCTACCTGAAGCAAACGCTGACCTCTGTTCTCTCCAGAATGACTCCCGAAGAAG
AGGAGGACTCTGTGGTGATCGTCTCTGTCGCTGATACTGATGAAAGTTATTTAAAATCTGTTGTTCGCAT
GGTTAAAACCAAATTCAGAAAGCAAGTGCAGTCCGGCGTCTTGGAGGTCATTTCAATACCCACCCTTTTT
TATCCTCAAACATTACTGGACAAGAAAACGAAGACGGACTCAGAAAGTTGGCAAATAAAACAAGTATTGG
ACTTCTGTATTCTGATGCTGTATGCCCAGCCCAAGGCCACGTATTATTTACAGCTAGAAGATGATATCGT
AGCAAAAAAGATGTATTTTACAAAAATGAAAGATTTTGTAAATAGTCTCACTTCAAAAAATTGGTTTTTT
ATTGAGTTTTCAGTCCTTGGATTTATAGGGAAACTCTTTCGATCGAAGGACCTCACTGACTTTGTGCATT
TTTTCCTGATGTTCTATGAGACAAAGCCCATAGATATACTTTTAGATGACATTTTCCTGATCCGGGTGTG
CATCTCAGGGGAGCCTGTTAGGAGCTGTTTGCAGCGAAAGAAGGGATTTCGAATTCAGTACAGACCATCT
CTGTTCCAGCATGTGGGCACTCAGTCATCATTTCCAGGACGAGAACAGCACCTCAAGGATAATTATTACT
AG

Translation (373 aa):
MKAKNVNLLFAFVAVLLFGFSCFCISRMNQTNNQLINCRNHVLEFKEIMLRLKNKSENHHQDLMQVLYQM
KRKAAHTTRSSGNFLEKKGSILSQHETLPNQFEVLKYFLPHLRTAGKLYPAIATSKGRAGVSFALGISTI
NRGNHTYLKQTLTSVLSRMTPEEEEDSVVIVSVADTDESYLKSVVRMVKTKFRKQVQSGVLEVISIPTLF
YPQTLLDKKTKTDSESWQIKQVLDFCILMLYAQPKATYYLQLEDDIVAKKMYFTKMKDFVNSLTSKNWFF
IEFSVLGFIGKLFRSKDLTDFVHFFLMFYETKPIDILLDDIFLIRVCISGEPVRSCLQRKKGFRIQYRPS
LFQHVGTQSSFPGREQHLKDNYY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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