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Report for CCDS29403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29403.1 Public Mus musculus 19 Aldh3b1 23 108 98 CCDS HistoryNCBI Gene:67689Re-query CCDS DB by CCDS ID:29403.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051803.7 ENSMUSP00000056276.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051803.7Link to Ensembl Protein Viewer:ENSMUSP00000056276.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051803Re-query CCDS DB by Protein ID:ENSMUSP00000056276
Original member Current member NCBI NM_026316.3 NP_080592.2 Accepted alive Link to Nucleotide Sequence:NM_026316.3Link to Protein Sequence:NP_080592.2Re-query CCDS DB by Nucleotide ID:NM_026316Re-query CCDS DB by Protein ID:NP_080592Link to BLAST:NP_080592.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080592.2 468 Q80VQ0 468 100% 0 0

Chromosomal Locations for CCDS 29403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3913894 3914084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3915294 3915393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3918042 3918208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3918603 3918989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3920797 3920878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3921183 3921268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3921473 3921593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3921697 3921807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3923739 3923900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGACTCGTTTGAAGACAAGCTTCAGCAGCTGCGGGAGGCCTTCAAGGAGGGGCGGACGAGGTCAGCTG
AGTTCCGAGCGGCACAGCTGCAAGGCCTGAGCCACTTCCTCCGAGACAACAAACAACAGCTGCAGGAGGC
GTTGGCCCAAGACCTGCACAAGTCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAG
GTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTGGCTACAC
AGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCC
CATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAGGGAATTGTGTGGTGCTCAAGCCCTCA
GAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGAGCTGCTTTA
CTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCAC
AGGGAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAG
CTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGATAGTGGCCAACCGTGTGGCCT
GGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCA
GGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGGAGACAACCCACAGACCTCCCCC
AACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGATTGCTGGGCTGTGGCCGTGTGG
CCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTGCCCCCACAGTGTTAGTGGACGTGCAGGAGAC
AGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAA
GCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAGGTTA
TCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCT
GTCCAGCCTTCCTTTTGGAGGAGTGGGAACCAGCGGGATGGGCAGGTACCACGGCAAGTTCTCCTTTGAC
ACCTTCTCCAACCAGCGTGCCTGTCTGCTGCGCAGCCCGGGAATGGAGAAAATCAATGACTTGCGCTACC
CACCCTACTCCAGTCGCAACCTCAGGGTGTTGTTGGTGGCCATGGAGGAGAGGTGCTGCAGCTGCACCCT
GCTGTAA

Translation (468 aa):
MDSFEDKLQQLREAFKEGRTRSAEFRAAQLQGLSHFLRDNKQQLQEALAQDLHKSAFEAEVSEIAISQAE
VDLALRNLRSWMKDEKVSKNLATQLDSAFIRKEPFGLVLIIVPWNYPINLTLVPLVGAIAAGNCVVLKPS
EISKATEKILAEVLPRYLDQSCFTVVLGGRQETGQLLEHKFDYIFFTGNAYVGKIVMAAAAKHLTPITLE
LGGKNPCYVDDNCDPQIVANRVAWFRYFNAGQTCVAPDYILCSQEMQERLVPALQNAITRFYGDNPQTSP
NLGRIINQKHFKRLQGLLGCGRVAIGGQSDEGERYIAPTVLVDVQETEPVMQEEIFGPILPLVTVRSLDE
AIEFMNRREKPLALYAFSKRSQVIKQVLARTSSGGFCGNDGFMHMTLSSLPFGGVGTSGMGRYHGKFSFD
TFSNQRACLLRSPGMEKINDLRYPPYSSRNLRVLLVAMEERCCSCTLL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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