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Report for CCDS7473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7473.1 Public Homo sapiens 10 LOXL4 24 110 108 CCDS HistoryNCBI Gene:84171Re-query CCDS DB by CCDS ID:7473.1Re-query CCDS DB by GeneID:84171See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260702.4 ENSP00000260702.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260702.4Link to Ensembl Protein Viewer:ENSP00000260702.3Re-query CCDS DB by Nucleotide ID:ENST00000260702Re-query CCDS DB by Protein ID:ENSP00000260702
Original member Current member NCBI NM_032211.7 NP_115587.6 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032211.7Link to Protein Sequence:NP_115587.6Re-query CCDS DB by Nucleotide ID:NM_032211Re-query CCDS DB by Protein ID:NP_115587Link to BLAST:NP_115587.6

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115587.6 756 Q96JB6 756 100% 0 0

Chromosomal Locations for CCDS 7473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 98248921 98248991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98251065 98251176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98251566 98251702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98252353 98252468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98253553 98253796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98255577 98255739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98256780 98256947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98257650 98257804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98257981 98258164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98259009 98259228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98259391 98259429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98260922 98261127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98262035 98262213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98262743 98263019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGGCGTGGTCCCCACCAGCCACCCTCTTTCTGTTCCTGCTGCTGCTAGGCCAGCCCCCTCCCAGCAGGC
CACAGTCACTGGGCACCACTAAGCTCCGGCTGGTGGGCCCAGAGAGCAAGCCAGAGGAGGGCCGCCTGGA
GGTGCTGCACCAGGGCCAGTGGGGCACCGTGTGTGATGACAACTTTGCTATCCAGGAGGCCACAGTGGCT
TGCCGCCAGCTGGGCTTCGAAGCTGCCTTGACCTGGGCCCACAGTGCCAAGTACGGCCAAGGGGAGGGAC
CCATCTGGCTGGACAATGTGCGCTGTGTGGGCACAGAGAGCTCCTTGGACCAGTGCGGGTCTAATGGCTG
GGGAGTCAGTGACTGCAGTCACTCAGAAGACGTAGGGGTGATATGCCACCCCCGGCGCCATCGTGGCTAC
CTTTCTGAAACTGTCTCCAATGCCCTTGGGCCCCAGGGCCGGCGGCTGGAGGAGGTGCGGCTCAAGCCCA
TCCTTGCCAGTGCCAAGCAGCATAGCCCAGTGACCGAGGGAGCCGTGGAGGTGAAGTATGAGGGCCACTG
GCGGCAGGTGTGTGACCAGGGCTGGACCATGAACAACAGCAGGGTGGTGTGCGGGATGCTGGGCTTCCCC
AGCGAGGTGCCTGTCGACAGCCACTACTACAGGAAAGTCTGGGATCTGAAGATGAGGGACCCTAAGTCTA
GGCTGAAGAGCCTGACGAATAAGAACTCCTTCTGGATCCACCAGGTCACCTGCCTGGGGACAGAGCCCCA
CATGGCCAACTGCCAGGTGCAGGTGGCTCCAGCCCGGGGCAAGCTGCGGCCAGCCTGCCCAGGTGGCATG
CACGCTGTGGTCAGCTGTGTGGCAGGGCCTCACTTCCGCCCACCGAAGACAAAGCCACAACGCAAAGGGT
CCTGGGCAGAGGAGCCGAGGGTGCGCCTGCGCTCCGGGGCCCAGGTGGGCGAGGGCCGGGTGGAAGTGCT
CATGAACCGCCAGTGGGGCACGGTCTGTGACCACAGGTGGAACCTCATCTCTGCCAGTGTCGTGTGTCGT
CAGCTGGGCTTTGGCTCTGCTCGGGAGGCCCTCTTTGGGGCCCGGCTGGGCCAAGGGCTAGGGCCCATCC
ACCTGAGTGAGGTGCGCTGCAGGGGATATGAGCGGACCCTCAGCGACTGCCCTGCCCTGGAAGGGTCCCA
GAATGGTTGCCAACATGAGAATGATGCTGCTGTCAGGTGCAATGTCCCTAACATGGGCTTTCAGAATCAG
GTGCGCTTGGCTGGTGGGCGTATCCCTGAGGAGGGGCTATTGGAGGTGCAGGTGGAGGTGAACGGGGTCC
CACGCTGGGGGAGCGTGTGCAGTGAAAACTGGGGGCTCACCGAAGCCATGGTGGCCTGCCGACAGCTCGG
CCTGGGTTTTGCCATCCATGCCTACAAGGAAACCTGGTTCTGGTCGGGGACGCCAAGGGCCCAGGAGGTG
GTGATGAGTGGGGTGCGCTGCTCAGGCACAGAGCTGGCCCTGCAGCAGTGCCAGAGGCACGGGCCGGTGC
ACTGCTCCCACGGTGGCGGGCGCTTCCTGGCTGGAGTCTCCTGCATGGACAGTGCACCAGACCTGGTGAT
GAACGCCCAGCTAGTGCAGGAGACGGCCTACTTGGAGGACCGCCCGCTCAGCCAGCTGTATTGTGCCCAC
GAGGAGAACTGCCTCTCCAAGTCTGCGGATCACATGGACTGGCCCTACGGATACCGCCGCCTATTGCGCT
TCTCCACACAGATCTACAATCTGGGCCGGACTGACTTTCGTCCAAAGACTGGACGCGATAGCTGGGTTTG
GCACCAGTGCCACAGGCATTACCACAGCATTGAGGTCTTCACCCACTACGACCTCCTCACTCTCAATGGC
TCCAAGGTGGCTGAGGGGCACAAGGCCAGCTTCTGTCTGGAGGACACAAACTGCCCCACAGGACTGCAGC
GGCGCTACGCATGTGCCAACTTTGGAGAACAGGGAGTGACTGTAGGCTGCTGGGACACCTACCGGCATGA
CATTGATTGCCAGTGGGTGGATATCACAGATGTGGGCCCCGGGAATTATATCTTCCAGGTGATTGTGAAC
CCCCACTATGAAGTGGCAGAGTCAGATTTCTCCAACAATATGCTGCAGTGCCGCTGCAAGTATGATGGGC
ACCGGGTCTGGCTGCACAACTGCCACACAGGGAATTCATACCCAGCCAATGCAGAACTCTCCCTGGAGCA
GGAACAGCGTCTCAGGAACAACCTCATCTGA

Translation (756 aa):
MAWSPPATLFLFLLLLGQPPPSRPQSLGTTKLRLVGPESKPEEGRLEVLHQGQWGTVCDDNFAIQEATVA
CRQLGFEAALTWAHSAKYGQGEGPIWLDNVRCVGTESSLDQCGSNGWGVSDCSHSEDVGVICHPRRHRGY
LSETVSNALGPQGRRLEEVRLKPILASAKQHSPVTEGAVEVKYEGHWRQVCDQGWTMNNSRVVCGMLGFP
SEVPVDSHYYRKVWDLKMRDPKSRLKSLTNKNSFWIHQVTCLGTEPHMANCQVQVAPARGKLRPACPGGM
HAVVSCVAGPHFRPPKTKPQRKGSWAEEPRVRLRSGAQVGEGRVEVLMNRQWGTVCDHRWNLISASVVCR
QLGFGSAREALFGARLGQGLGPIHLSEVRCRGYERTLSDCPALEGSQNGCQHENDAAVRCNVPNMGFQNQ
VRLAGGRIPEEGLLEVQVEVNGVPRWGSVCSENWGLTEAMVACRQLGLGFAIHAYKETWFWSGTPRAQEV
VMSGVRCSGTELALQQCQRHGPVHCSHGGGRFLAGVSCMDSAPDLVMNAQLVQETAYLEDRPLSQLYCAH
EENCLSKSADHMDWPYGYRRLLRFSTQIYNLGRTDFRPKTGRDSWVWHQCHRHYHSIEVFTHYDLLTLNG
SKVAEGHKASFCLEDTNCPTGLQRRYACANFGEQGVTVGCWDTYRHDIDCQWVDITDVGPGNYIFQVIVN
PHYEVAESDFSNNMLQCRCKYDGHRVWLHNCHTGNSYPANAELSLEQEQRLRNNLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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