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Report for CCDS24767.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24767.1 Public Mus musculus 11 Snap47 23 108 98 CCDS HistoryNCBI Gene:67826Re-query CCDS DB by CCDS ID:24767.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24767.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010038.9 ENSMUSP00000010038.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010038.9Link to Ensembl Protein Viewer:ENSMUSP00000010038.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000010038Re-query CCDS DB by Protein ID:ENSMUSP00000010038
Original member Current member NCBI NM_001356452.1 NP_001343381.1 Accepted alive Link to Nucleotide Sequence:NM_001356452.1Link to Protein Sequence:NP_001343381.1Re-query CCDS DB by Nucleotide ID:NM_001356452Re-query CCDS DB by Protein ID:NP_001343381Link to BLAST:NP_001343381.1
Original member Current member NCBI NM_144521.3 NP_653104.1 Accepted alive Link to Nucleotide Sequence:NM_144521.3Link to Protein Sequence:NP_653104.1Re-query CCDS DB by Nucleotide ID:NM_144521Re-query CCDS DB by Protein ID:NP_653104Link to BLAST:NP_653104.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343381.1 413 Q8R570-1 413 100% 0 0
NP_653104.1 413 Q8R570-1 413 100% 0 0

Chromosomal Locations for CCDS 24767.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59407664 59407810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59421525 59421649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59428341 59428813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59437978 59438474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGAGTTCTGATATGCGTGTCCACTCCTGGTCTTGTTCCTACTATCTGGACCTTGAGAAGCAATGGGTTT
CTGGAAAACTGACCCTGACTCCTCATTCACTGAAGTTCATTGTGGAAAAAACAGAAGAGGTCCTTGTTGG
CCTGCCCCTCTCCAGCATCATTGAGATCAGGAAAGAGTCATCTCTCTTTATCTTCGGTGCGATCACAGTC
CTGGAGAAGGGCCAGACCAAGCACTGGTTCAGCTCACTGCAGCCTAGTCGAAATGTGGTCTTCAACGTCA
TCGAACATTTCTGGAGGGAGCTGCTACTGTCCCAGCCAGGCACTGCTGCCAACATACCCTCCCACGTGAC
CAGGGGACAGGAGCTGATAGGACTGATGGCAAATTCCCAGAAACGCATGGAAGACACAGCGAAGGATCTC
CAGCAGCAGAGCGAACAGCTGGACAGCGTCCTGAAGGGCCTGGAGAAGATGGAGTCCGACCTGGACGTGG
CTGACAGATTGCTGACAGAATTGGAGACACCTTCCTGGTGGCCTTTTGGCTCTAAGTTTTGGAAGATGCC
GGCAGAAGAAAATCTCAAGGAAGGTGTGTCTTCCACTTGTGAGCCCTTTGGAAAGGAAGGGGTTGTGATC
ACGGTCCCTGCTATTATTTCTGAGAGAGCAGAGTCTCATTCCAAGCTGGGAAAGCTCACTGTCCTGGTCT
CCGCTCTGGAAATCTATGACTCCTGCTCGTTGCTCCTGCACAGATTTGAGAAGGAAGATGTTGATGATAT
CAAGGTTCACTCTCCTTATGAGGTCAGCATACGCCAGCGCTTCATTGGGAAGCCAGACGTGGCTTACCAG
CTGATATCTGCCAAGATGCCAGAGGTCATTCCCATCTTAGAAGTGCAGTTCAGCAGCAAGATTGAGCTCC
TGGAAGACGCCTTAGTGCTCAGGAACAAGGTCTTTGCTTCCTCTGCAGAGAGGCATGCAGCATCCAGACC
GAAGGGCTGCACTCCACACCGAGAGCTGCCCACAGGAGGACAGGAAGGCGAGCAGCTGCAGCTGCAGAAG
AACTTGCCACTGTTCTCTGAGGGGGAAGCCCAGGAGCTGACACAGATCCTGAGCAAAATGAAGGGACTCG
CACTGGACACTGAGGCAGAGCTGGAACGCCAGGATGCGGCTCTGGATGGCATCACCGTAGCTGTGGACCG
GGCAACCCTGAATGTGGACAAGCAAAACCGGCGTATGAGAAAGCTGATGTAG

Translation (413 aa):
MSSDMRVHSWSCSYYLDLEKQWVSGKLTLTPHSLKFIVEKTEEVLVGLPLSSIIEIRKESSLFIFGAITV
LEKGQTKHWFSSLQPSRNVVFNVIEHFWRELLLSQPGTAANIPSHVTRGQELIGLMANSQKRMEDTAKDL
QQQSEQLDSVLKGLEKMESDLDVADRLLTELETPSWWPFGSKFWKMPAEENLKEGVSSTCEPFGKEGVVI
TVPAIISERAESHSKLGKLTVLVSALEIYDSCSLLLHRFEKEDVDDIKVHSPYEVSIRQRFIGKPDVAYQ
LISAKMPEVIPILEVQFSSKIELLEDALVLRNKVFASSAERHAASRPKGCTPHRELPTGGQEGEQLQLQK
NLPLFSEGEAQELTQILSKMKGLALDTEAELERQDAALDGITVAVDRATLNVDKQNRRMRKLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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