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Report for CCDS23882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23882.1 Public Mus musculus 10 Ppa1 23 108 98 CCDS HistoryNCBI Gene:67895Re-query CCDS DB by CCDS ID:23882.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020286.6 ENSMUSP00000020286.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020286.6Link to Ensembl Protein Viewer:ENSMUSP00000020286.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020286Re-query CCDS DB by Protein ID:ENSMUSP00000020286
Original member Current member NCBI NM_026438.4 NP_080714.2 Accepted alive Link to Nucleotide Sequence:NM_026438.4Link to Protein Sequence:NP_080714.2Re-query CCDS DB by Nucleotide ID:NM_026438Re-query CCDS DB by Protein ID:NP_080714Link to BLAST:NP_080714.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080714.2 289 Q9D819 289 100% 0 0

Chromosomal Locations for CCDS 23882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61648728 61648791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61651560 61651618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61659449 61659502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61660912 61661031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61663690 61663776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61665340 61665466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61666911 61667038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61667585 61667670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61670418 61670487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61672391 61672433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61673819 61673850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGAGCGGCTTCAGCAGCGAGGAGCGCGCCGCGCCCTTCACCCTCGAGTACCGCGTCTTCCTCAAAAATG
AGAAAGGGCAGTACATTTCTCCATTTCATGATGTTCCAATTTATGCAGACAAGGATGTGTTCCACATGGT
GGTTGAGGTTCCACGCTGGTCCAACGCCAAAATGGAGATTGCTACAAAGGACCCTTTAAACCCAATCAAG
CAAGATGTGAAAAAGGGGAAGCTCCGCTATGTGGCGAATCTGTTCCCTTATAAAGGGTATATTTGGAACT
ACGGCGCCATCCCTCAGACATGGGAAGACCCAGGACACAGTGACAAGCACACTGGCTGCTGTGGTGACAA
CGACCCAATCGATGTTTGTGAAATCGGAAGCAAGGTGTGTGCCAGAGGTGAGATAATCAGGGTGAAGGTC
CTGGGCATACTGGCCATGATCGATGAGGGCGAGACCGACTGGAAGGTCATTGCCATTAATGTGGACGATC
CGGACGCAGCCAATTATAAAGATATTTCTGATGTCGAACGGCTAAAACCCGGCTATTTAGAAGCTACTGT
TGATTGGTTTAGAAGGTATAAGGTTCCTGATGGAAAACCAGAAAATGAGTTTGCATTCAATGCAGAATTT
AAAAACAAGGACTTTGCAGTTGACATTATTAAAAGCACCCACGATTATTGGAAAGCATTAGTGACTAAGA
AAACAGATGGGAAAGGAATCAGTTGCATGAACACCACGGTGTCGGAGAGCCCCTTCAAGTGCGATCCTGA
TGCTGCCAAAGCCATTGTGGATGCTTTGCCACCACCATGTGAATCTGCCTGCTCACTGCCGACAGATGTG
GATAAATGGTTCCATCAGCAGAAAAACTGA

Translation (289 aa):
MSGFSSEERAAPFTLEYRVFLKNEKGQYISPFHDVPIYADKDVFHMVVEVPRWSNAKMEIATKDPLNPIK
QDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHSDKHTGCCGDNDPIDVCEIGSKVCARGEIIRVKV
LGILAMIDEGETDWKVIAINVDDPDAANYKDISDVERLKPGYLEATVDWFRRYKVPDGKPENEFAFNAEF
KNKDFAVDIIKSTHDYWKALVTKKTDGKGISCMNTTVSESPFKCDPDAAKAIVDALPPPCESACSLPTDV
DKWFHQQKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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