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Report for CCDS22222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22222.1 Public Mus musculus 8 Mak16 23 108 98 CCDS HistoryNCBI Gene:67920Re-query CCDS DB by CCDS ID:22222.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033983.5 ENSMUSP00000033983.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033983.5Link to Ensembl Protein Viewer:ENSMUSP00000033983.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033983Re-query CCDS DB by Protein ID:ENSMUSP00000033983
Original member Current member NCBI NM_026453.3 NP_080729.1 Accepted alive Link to Nucleotide Sequence:NM_026453.3Link to Protein Sequence:NP_080729.1Re-query CCDS DB by Nucleotide ID:NM_026453Re-query CCDS DB by Protein ID:NP_080729Link to BLAST:NP_080729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080729.1 296 Q8BGS0-1 296 100% 0 0

Chromosomal Locations for CCDS 22222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 31160389 31160577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31160759 31160824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31161722 31161835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31163031 31163105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31164718 31164772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31166062 31166213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31166374 31166438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31166523 31166632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31166710 31166759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31168665 31168679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGCAGTCGGACGACGTAATCTGGAATACACTAGGAAACAAGCAGTTTTGTTCTTTCAAAATAAGAACCA
AGACTCAGGGCTTCTGCAGAAATGAATACAGTCTGACTGGTCTGTGCAATCGGTCGTCCTGTCCTCTGGC
AAATAGTCAGTATGCTACCATTAAAGAAGAGAAAGGGCAGTGCTACCTGTACATGAAGGTTATAGAGCGA
GCAGCTTTTCCCAGGCGTCTCTGGGAACGGGTCCGGCTTAGTAAAAACTATGAAAAAGCACTGGAACAAA
TAGATGAAAATCTGATCTATTGGCCCCGCTTTATCAGACACAAATGTAAGCAGAGGTTTACCAAGATAAC
CCAGTACCTGATTCGAATCAGAAAACTTACACTGAAGCGACAGAGGAAGCTTGTTCCTTTGAGTAAGAAG
GTTGAACGAAGGGAAAAACGAAGAGAGGAAAAAGCATTAATAGCTGCCCAGCTGGACAATGCTATTGAGA
AGGAATTGCTGGAGAGACTGAAACAAGATACGTATGGCGACATCTACAACTTCCCCATCCATGCCTTCGA
CAAGGCCCTAGAGAAACAGGAAGCAGAAAGTGACTCTGAAGATGAAGAAGAAGAAGAAGATGAAGACGAA
GAAGAGGATGTGGGGAAAAGAGAGTTTGTAGAAGATGAGGAGGTGGAGGAGAGTGACCTGAGTGACTTTG
AGGATATGGATAAACTGAATACTGACAGTGAGGAAGACCAGGATGATGAATCCTCCAATGATGAAGAGGC
TCATAAGGCTAAGCACAAAGGCAAAGCACCCTTGAAAGGACCTTTACGGAAAAAACGGGCCTATGTGGAA
ATAGAGTATGAACAGGAGACAGAGCCCATGGCCAAAGTCAAAGCCACATGA

Translation (296 aa):
MQSDDVIWNTLGNKQFCSFKIRTKTQGFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIER
AAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKK
VERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALEKQEAESDSEDEEEEEDEDE
EEDVGKREFVEDEEVEESDLSDFEDMDKLNTDSEEDQDDESSNDEEAHKAKHKGKAPLKGPLRKKRAYVE
IEYEQETEPMAKVKAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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