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Report for CCDS9711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9711.1 Public Homo sapiens 14 STYX 24 110 108 CCDS HistoryNCBI Gene:6815Re-query CCDS DB by CCDS ID:9711.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9711.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354586.5 ENSP00000346599.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354586.5Link to Ensembl Protein Viewer:ENSP00000346599.4Re-query CCDS DB by Nucleotide ID:ENST00000354586Re-query CCDS DB by Protein ID:ENSP00000346599
Original member Current member EBI ENST00000442123.6 ENSP00000403214.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442123.6Link to Ensembl Protein Viewer:ENSP00000403214.2Re-query CCDS DB by Nucleotide ID:ENST00000442123Re-query CCDS DB by Protein ID:ENSP00000403214
Original member Current member NCBI NM_001130701.2 NP_001124173.1 Accepted alive Link to Nucleotide Sequence:NM_001130701.2Link to Protein Sequence:NP_001124173.1Re-query CCDS DB by Nucleotide ID:NM_001130701Re-query CCDS DB by Protein ID:NP_001124173Link to BLAST:NP_001124173.1
Original member Current member NCBI NM_145251.4 NP_660294.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145251.4Link to Protein Sequence:NP_660294.1Re-query CCDS DB by Nucleotide ID:NM_145251Re-query CCDS DB by Protein ID:NP_660294Link to BLAST:NP_660294.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124173.1 223 Q8WUJ0 223 100% 0 0
NP_660294.1 223 Q8WUJ0 223 100% 0 0

Chromosomal Locations for CCDS 9711.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52730475 52730531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52744852 52744884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52746426 52746479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52750683 52750780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52756551 52756611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52757319 52757355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52757743 52757782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52757874 52757924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52759682 52759754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52768840 52768933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52771033 52771106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGAGGACGTGAAGCTGGAGTTCCCTTCCCTTCCACAGTGCAAGGAAGACGCCGAGGAGTGGACCTACC
CTATGAGACGAGAGATGCAGGAAATTTTACCTGGATTGTTCTTAGGCCCATATTCATCTGCTATGAAAAG
CAAGCTACCTGTACTACAGAAACATGGAATAACCCATATAATATGCATACGACAAAATATTGAAGCAAAC
TTTATTAAACCAAACTTTCAGCAGTTATTTAGATATTTAGTCCTGGATATTGCAGATAATCCAGTTGAAA
ATATAATACGTTTTTTCCCTATGACTAAGGAATTTATTGATGGGAGCTTACAAATGGGAGGAAAAGTTCT
TGTGCATGGAAATGCAGGGATCTCCAGAAGTGCAGCCTTTGTTATTGCATACATTATGGAAACATTTGGA
ATGAAGTACAGAGATGCTTTTGCTTATGTTCAAGAAAGAAGATTTTGTATTAATCCTAATGCTGGATTTG
TCCATCAACTTCAGGAATATGAAGCCATCTACCTAGCAAAATTAACAATACAGATGATGTCACCACTCCA
GATAGAAAGGTCATTATCTGTTCATTCTGGTACCACAGGCAGTTTGAAGAGAACACATGAAGAAGAGGAT
GATTTTGGAACCATGCAAGTGGCGACTGCACAGAATGGCTGA

Translation (223 aa):
MEDVKLEFPSLPQCKEDAEEWTYPMRREMQEILPGLFLGPYSSAMKSKLPVLQKHGITHIICIRQNIEAN
FIKPNFQQLFRYLVLDIADNPVENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISRSAAFVIAYIMETFG
MKYRDAFAYVQERRFCINPNAGFVHQLQEYEAIYLAKLTIQMMSPLQIERSLSVHSGTTGSLKRTHEEED
DFGTMQVATAQNG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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