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Report for CCDS29603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29603.1 Public Mus musculus 19 Ms4a6d 23 108 98 CCDS HistoryNCBI Gene:68774Re-query CCDS DB by CCDS ID:29603.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29603.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025582.10 ENSMUSP00000025582.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025582.10Link to Ensembl Protein Viewer:ENSMUSP00000025582.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025582Re-query CCDS DB by Protein ID:ENSMUSP00000025582
Original member NCBI NM_026835.2 NP_081111.1 Updated not alive Link to Nucleotide Sequence:NM_026835.2Link to Protein Sequence:NP_081111.1Re-query CCDS DB by Nucleotide ID:NM_026835Re-query CCDS DB by Protein ID:NP_081111
Current member NCBI NM_026835.3 NP_081111.1 Accepted alive Link to Nucleotide Sequence:NM_026835.3Link to Protein Sequence:NP_081111.1Re-query CCDS DB by Nucleotide ID:NM_026835Re-query CCDS DB by Protein ID:NP_081111Link to BLAST:NP_081111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081111.1 247 Q99N07 247 99.5951% 0 1

Chromosomal Locations for CCDS 29603.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11587086 11587181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11587964 11588065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11589990 11590196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11592865 11592921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11601830 11601964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11603146 11603292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGATTCCACAAGTAGTGACCAGTGAGACTGTCACAGTGATTTCACCAAATGGAATCAGCTTTCCCCAAA
CAGACAAACCCCAGCCTTCCCACCAGAGCCAAGACAGCCTGAAGAAACATCTAAAGGCTGAGATCAAAGT
GATGGCGGCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCC
TCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGT
TTTTTGCCATCTCTGGAATTCTGTCTATTGTCACAGAGAAAAAGATGACTAAGCCTTTGGTTCACAGCAG
CCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCT
GCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATC
ATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACTGGAGTCTTTTCACT
GATGCTAATCAGCAGTGTGTTGGAGCTTGGCCTGGCTGTCCTCACTGCCACACTGTGGTGGAAACAGAGC
TCCTCTGCTTTCTCTGGGAATGTGATTTTCCTGTCTCAGAACTCAAAGAATAAATCCAGTGTATCTTCAG
AGTCACTTTGTAACCCTACATATGAAAACATATTGACTTCATAA

Translation (247 aa):
MIPQVVTSETVTVISPNGISFPQTDKPQPSHQSQDSLKKHLKAEIKVMAAIQIMCAVMVLALGIILASVP
SNLHFTSVFSILLESGYPFVGALFFAISGILSIVTEKKMTKPLVHSSLALSILSVLSALTGIAILSVSLA
ALEPALQQCKLAFTQLDTTQDAYHFFSPEPLNSCFVAKAALTGVFSLMLISSVLELGLAVLTATLWWKQS
SSAFSGNVIFLSQNSKNKSSVSSESLCNPTYENILTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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