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Report for CCDS4259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4259.1 Public Homo sapiens 5 TAF7 24 110 108 CCDS HistoryNCBI Gene:6879Re-query CCDS DB by CCDS ID:4259.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4259.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313368.8 ENSP00000312709.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313368.8Link to Ensembl Protein Viewer:ENSP00000312709.5Re-query CCDS DB by Nucleotide ID:ENST00000313368Re-query CCDS DB by Protein ID:ENSP00000312709
Original member Current member EBI ENST00000624761.2 ENSP00000485510.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000624761.2Link to Ensembl Protein Viewer:ENSP00000485510.2Re-query CCDS DB by Nucleotide ID:ENST00000624761Re-query CCDS DB by Protein ID:ENSP00000485510
Original member Current member NCBI NM_005642.3 NP_005633.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005642.3Link to Protein Sequence:NP_005633.2Re-query CCDS DB by Nucleotide ID:NM_005642Re-query CCDS DB by Protein ID:NP_005633Link to BLAST:NP_005633.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005633.2 349 Q15545 349 100% 0 0

Chromosomal Locations for CCDS 4259.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141318995 141320044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGAGTAAAAGCAAAGATGATGCTCCTCACGAACTGGAGAGCCAGTTTATCTTACGTCTGCCTCCAGAAT
ATGCCTCTACTGTGAGAAGGGCAGTACAGTCTGGTCATGTCAACCTCAAGGACAGACTGACAATTGAGTT
ACATCCTGATGGGCGTCATGGAATCGTCAGAGTGGACCGTGTTCCATTGGCCTCAAAATTAGTAGACCTG
CCCTGTGTTATGGAAAGCTTGAAAACCATTGATAAAAAAACTTTTTACAAGACAGCTGATATCTGTCAGA
TGCTTGTATCCACAGTTGATGGTGATCTCTATCCTCCTGTGGAGGAGCCAGTTGCTAGCACTGATCCTAA
AGCAAGCAAGAAAAAGGATAAGGACAAAGAGAAAAAGTTTATCTGGAACCACGGAATTACTCTGCCTCTA
AAGAATGTCAGGAAGAGAAGGTTCCGGAAGACAGCAAAGAAGAAATATATTGAATCTCCAGATGTTGAAA
AAGAAGTGAAACGATTGCTGAGTACAGATGCTGAAGCTGTTAGTACTCGGTGGGAAATAATTGCCGAAGA
TGAAACAAAGGAGGCAGAAAATCAAGGCCTGGATATCTCTTCTCCAGGAATGTCTGGTCACAGGCAGGGC
CATGACTCATTAGAACATGATGAGCTTCGGGAGATATTCAATGACCTCAGCAGCAGCAGTGAGGATGAAG
ATGAGACCCAGCATCAAGATGAAGAAGATATAAACATCATTGACACGGAGGAAGATCTGGAGAGACAGCT
ACAGGACAAGCTAAATGAATCAGATGAACAGCACCAGGAAAATGAAGGAACCAATCAGCTGGTTATGGGA
ATTCAGAAGCAGATTGACAACATGAAAGGCAAGCTCCAAGAGACCCAGGACAGGGCAAAACGACAAGAGG
ATCTCATCATGAAAGTGGAAAATCTGGCTCTCAAGAACAGATTTCAGGCTGTACTGGATGAGCTCAAACA
AAAGGAAGACCGAGAAAAGGAGCAACTCAGCTCTTTGCAAGAGGAGCTAGAATCACTCCTAGAGAAGTAA

Translation (349 aa):
MSKSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDL
PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPL
KNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEIIAEDETKEAENQGLDISSPGMSGHRQG
HDSLEHDELREIFNDLSSSSEDEDETQHQDEEDINIIDTEEDLERQLQDKLNESDEQHQENEGTNQLVMG
IQKQIDNMKGKLQETQDRAKRQEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEELESLLEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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