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Report for CCDS23886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23886.1 Public Mus musculus 10 Fam241b 23 108 98 CCDS HistoryNCBI Gene:69894Re-query CCDS DB by CCDS ID:23886.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064050.4 ENSMUSP00000063504.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064050.4Link to Ensembl Protein Viewer:ENSMUSP00000063504.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000064050Re-query CCDS DB by Protein ID:ENSMUSP00000063504
Original member Current member EBI ENSMUST00000125704.7 ENSMUSP00000115865.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125704.7Link to Ensembl Protein Viewer:ENSMUSP00000115865.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125704Re-query CCDS DB by Protein ID:ENSMUSP00000115865
Original member Current member EBI ENSMUST00000142796.7 ENSMUSP00000116424.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142796.7Link to Ensembl Protein Viewer:ENSMUSP00000116424.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142796Re-query CCDS DB by Protein ID:ENSMUSP00000116424
Original member Current member EBI ENSMUST00000124615.7 ENSMUSP00000118912.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124615.7Link to Ensembl Protein Viewer:ENSMUSP00000118912.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124615Re-query CCDS DB by Protein ID:ENSMUSP00000118912
Original member Current member EBI ENSMUST00000142821.7 ENSMUSP00000119289.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142821.7Link to Ensembl Protein Viewer:ENSMUSP00000119289.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142821Re-query CCDS DB by Protein ID:ENSMUSP00000119289
Original member Current member NCBI NM_001358252.1 NP_001345181.1 Accepted alive Link to Nucleotide Sequence:NM_001358252.1Link to Protein Sequence:NP_001345181.1Re-query CCDS DB by Nucleotide ID:NM_001358252Re-query CCDS DB by Protein ID:NP_001345181Link to BLAST:NP_001345181.1
Original member Current member NCBI NM_001358253.1 NP_001345182.1 Accepted alive Link to Nucleotide Sequence:NM_001358253.1Link to Protein Sequence:NP_001345182.1Re-query CCDS DB by Nucleotide ID:NM_001358253Re-query CCDS DB by Protein ID:NP_001345182Link to BLAST:NP_001345182.1
Original member Current member NCBI NM_027251.4 NP_081527.1 Accepted alive Link to Nucleotide Sequence:NM_027251.4Link to Protein Sequence:NP_081527.1Re-query CCDS DB by Nucleotide ID:NM_027251Re-query CCDS DB by Protein ID:NP_081527Link to BLAST:NP_081527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345181.1 120 Q9D882 120 100% 0 0
NP_001345182.1 120 Q9D882 120 100% 0 0
NP_081527.1 120 Q9D882 120 100% 0 0

Chromosomal Locations for CCDS 23886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62108854 62109123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62109884 62109976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGGTGAGGATCTTGGCCAATGGGGAGATCGTTCAGGATGATGACCCACGAGTGAGGACGACCACCCAGC
ACAGAAGTAGCAGCTCTCAGCAGGGCTTTTTCAACAGAGGCCACGGCGCACCTCCAGGGGGCCCTGGACC
CCGCCAGCAGCAGGCAGGTGCCCGACTGGGTGCTGCCCAATCTCCTTTCAGTGACCTGAACCGGCAGCTG
GTGAACATGGGCTTCCCACAATGGCACCTTGGGAACCACGTGGTGGAACCTGTGACCTCCATCCTCCTGC
TCTTCCTGCTTATGATGCTCGGGGTTCGTGGCCTCCTGCTTGTGGGCCTGGTCTACCTGGTGTCTCACCT
GAGTCAGCGGTGA

Translation (120 aa):
MVRILANGEIVQDDDPRVRTTTQHRSSSSQQGFFNRGHGAPPGGPGPRQQQAGARLGAAQSPFSDLNRQL
VNMGFPQWHLGNHVVEPVTSILLLFLLMMLGVRGLLLVGLVYLVSHLSQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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