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Report for CCDS49282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49282.1 Public Mus musculus 13 Qng1 23 108 98 CCDS HistoryNCBI Gene:70153Re-query CCDS DB by CCDS ID:49282.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49282.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022032.6 ENSMUSP00000022032.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022032.6Link to Ensembl Protein Viewer:ENSMUSP00000022032.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022032Re-query CCDS DB by Protein ID:ENSMUSP00000022032
Original member Current member NCBI NM_027335.1 NP_081611.1 Accepted alive Link to Nucleotide Sequence:NM_027335.1Link to Protein Sequence:NP_081611.1Re-query CCDS DB by Nucleotide ID:NM_027335Re-query CCDS DB by Protein ID:NP_081611Link to BLAST:NP_081611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081611.1 338 G3X8U3 338 100% 0 0

Chromosomal Locations for CCDS 49282.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 58381780 58382009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58382408 58382603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58384150 58384409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58384824 58385154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGGGCCACCGCTTTCGCCGCGCGAGTCGGCGAGGTTCGTGGCCGAGAACAGTCGCGACGTGCTCGTGG
ACCACGAGGGCGTGCGCAGGGCGGCCGAGCTGCTGCTGCCCGCGGCCGCGGCGTGGCGCGTGGAGCAGTG
GAAGTCCCTGCACGAGCTCAACCCGCGCGGGGCGGACGAGGCTGCGCTCGGCTGGGTGTTCCTGGTGGAC
TCGCTCAACTTCTCCTTCTGGGCCGAGCGGGAGGACAGCAAGTGTGCGGTGCGCTACGGCGGGACGCCCT
ACACTGGCTACTGGGCCCTGTGCGCCGCCGTCAACCGCGCGCTCGACCAAGGGATACCGATAACCAGCGC
CTCCTACTACGCCACAGTGAGCCTCGAGCAGGTGCGGGATATATTTCGTTCAGACACAGCTGTGCCCATG
CCTTTAATGGAAGAGAGACATCGGATTCTCAATGAAACTGGGAAAATCCTACTGGAGAAGTTTGGAGGCT
CTTTTCTTAACTGTGTCCAAAAAAGTGGCAGAAGTGCGCAGAAGTTAATGCAGCTGATTGTTGAGAACTT
CCCTTCTTACAGGGACGAGGCAGAGTTTGAGGGGAAAAGGATCGCCTTTTACAAACGAGCACAGATCCTC
GTGGCGGACACGTGGAGTGTGCTGGAGGGCAAGGGAGATGGCTGCTTCGAGGACATCTCCAGCATCACCA
TGTTTGCTGACTACAGGCTGCCTCAGATTCTCGTGTACCTTGGAGCCCTGAAGTACTCAGATGAGCTACT
AAAGAAGCTCCTCAAAGGAGAGATGCTCTTGAATGGAGATAAACAGGAAGTGGAAATTAGAGGTTGCTCC
ATTTGGTGTGTCGAGCTGATCCGGGACCGTCTTCTGGAGCTTCTTGAAAAGGGTGAAAACTCTCCTGTTG
AGATCAACTCTGTTCTTCTGGACTATCACCTGTGGGACTATGCCCGAGAGCACAGGGAAGACATGAAGGG
AGTCCCTTTTCATCGCACACGCTGCATCTACTACTGA

Translation (338 aa):
MGPPLSPRESARFVAENSRDVLVDHEGVRRAAELLLPAAAAWRVEQWKSLHELNPRGADEAALGWVFLVD
SLNFSFWAEREDSKCAVRYGGTPYTGYWALCAAVNRALDQGIPITSASYYATVSLEQVRDIFRSDTAVPM
PLMEERHRILNETGKILLEKFGGSFLNCVQKSGRSAQKLMQLIVENFPSYRDEAEFEGKRIAFYKRAQIL
VADTWSVLEGKGDGCFEDISSITMFADYRLPQILVYLGALKYSDELLKKLLKGEMLLNGDKQEVEIRGCS
IWCVELIRDRLLELLEKGENSPVEINSVLLDYHLWDYAREHREDMKGVPFHRTRCIYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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