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Report for CCDS4415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4415.1 Public Homo sapiens 5 PRELID1 24 110 108 CCDS HistoryNCBI Gene:27166Re-query CCDS DB by CCDS ID:4415.1Re-query CCDS DB by GeneID:27166See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4415.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303204.9 ENSP00000302114.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303204.9Link to Ensembl Protein Viewer:ENSP00000302114.4Re-query CCDS DB by Nucleotide ID:ENST00000303204Re-query CCDS DB by Protein ID:ENSP00000302114
Original member Current member NCBI NM_013237.4 NP_037369.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013237.4Link to Protein Sequence:NP_037369.1Re-query CCDS DB by Nucleotide ID:NM_013237Re-query CCDS DB by Protein ID:NP_037369Link to BLAST:NP_037369.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037369.1 219 Q9Y255-1 219 100% 0 0

Chromosomal Locations for CCDS 4415.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 177303986 177304077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177304625 177304850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177305871 177305984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177306098 177306176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177306422 177306570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGGAGTTCCTGGGACCAAGTGTTCGCCGCCTTCTGGC
AGCGGTACCCGAATCCCTATAGCAAACATGTCTTGACGGAAGACATAGTACACCGGGAGGTGACCCCTGA
CCAGAAACTGCTGTCCCGGCGACTCCTGACCAAGACCAACAGGATGCCACGCTGGGCCGAGCGACTATTT
CCTGCCAATGTTGCTCACTCGGTGTACGTCCTGGAGGACTCTATTGTGGACCCACAGAATCAGACCATGA
CTACCTTCACCTGGAACATCAACCACGCCCGGCTGATGGTGGTGGAGGAACGATGTGTTTACTGTGTGAA
CTCTGACAACAGTGGCTGGACTGAAATCCGCCGGGAAGCCTGGGTCTCCTCTAGCTTATTTGGTGTCTCC
AGAGCTGTCCAGGAATTTGGTCTTGCCCGATTCAAAAGCAACGTGACCAAGACTATGAAGGGTTTTGAAT
ATATCTTGGCTAAGCTGCAAGGCGAGGCCCCTTCCAAAACACTTGTTGAGACAGCCAAGGAAGCCAAGGA
GAAGGCAAAGGAGACGGCACTGGCAGCTACAGAGAAGGCCAAGGACCTCGCCAGCAAGGCGGCCACCAAG
AAGCAGCAGCAGCAGCAACAGTTTGTGTAG

Translation (219 aa):
MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTNRMPRWAERLF
PANVAHSVYVLEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDNSGWTEIRREAWVSSSLFGVS
RAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPSKTLVETAKEAKEKAKETALAATEKAKDLASKAATK
KQQQQQQFV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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