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Report for CCDS38976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38976.1 Public Mus musculus 4 Slc25a33 23 108 98 CCDS HistoryNCBI Gene:70556Re-query CCDS DB by CCDS ID:38976.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105686.2 ENSMUSP00000101311.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105686.2Link to Ensembl Protein Viewer:ENSMUSP00000101311.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105686Re-query CCDS DB by Protein ID:ENSMUSP00000101311
Original member Current member NCBI NM_027460.2 NP_081736.2 Accepted alive Link to Nucleotide Sequence:NM_027460.2Link to Protein Sequence:NP_081736.2Re-query CCDS DB by Nucleotide ID:NM_027460Re-query CCDS DB by Protein ID:NP_081736Link to BLAST:NP_081736.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081736.2 320 Q3TZX3 320 100% 0 0

Chromosomal Locations for CCDS 38976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149744738 149744937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149749049 149749329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149752404 149752470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149753799 149753899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149756075 149756152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149762367 149762546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149774000 149774055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCGACGGGCACTCAGCAGAAAGAGAACACGCTGCTTCATCTCTTCGCCGGCGGGTGCGGGGGCACAG
TTGGTGCTATTTTCACATGTCCACTAGAAGTCATTAAGACGCGACTGCAGTCTTCGAGACTAGCTCTTCG
GACGGTGTATTACCCTCAGGTTCATCTGGGGACCATTAGTGGAGCTGGAATGGTGAGACCAACGTCTGTG
ACGCCTGGACTCCTACAGGTTCTGAAATCAATCCTGGAAAAGGAGGGACCAAAGTCACTCTTTAGAGGCC
TGGGTCCAAATTTGGTTGGAGTTGCACCATCAAGGGCTGTGTACTTTGCATGTTATTCCAAAGCCAAAGA
GCAATTCAATGGCATCTTCGTGCCTAATAGCAATACTGTGCACATTCTCTCAGCTGGCTCTGCAGCTTTT
GTCACAAATACCTTAATGAATCCTATTTGGATGGTTAAAACGAGGATGCAGCTAGAACGCAAGGTGAGGG
GCTGCAAGCAGATGAACACACTCCAGTGTGCTCGGCGTGTCTACCAGACAGAAGGCGTCCGCGGCTTCTA
TAGAGGGCTGACCGCCTCCTACGCTGGGATCTCGGAGACAATCATCTGCTTTGCTATTTATGAGAGCTTA
AAGAAGTGTTTGAAAGACGCTCCGATCGTCTCCTCCACAGATGGAGCTGAGAAAAGTTCCTCTGGCTTCT
TTGGACTCATGGCAGCTGCTGCTGTTTCTAAGGGATGTGCCTCCTGCATCGCTTACCCACACGAGGTCAT
CAGGACGCGGCTCCGCGAGGAAGGCAGCAAGTACAGGTCGTTCGTGCAGACCGCGCGCCTGGTGTTCCGG
GAGGAAGGCTACCTCGCCTTCTACCGAGGACTGTTTGCTCAGCTCATCCGGCAGATCCCCAACACTGCCA
TTGTCCTGTCCACCTACGAGTTCATCGTGTACCTGCTGGGAGAGCGTGCTTAG

Translation (320 aa):
MATGTQQKENTLLHLFAGGCGGTVGAIFTCPLEVIKTRLQSSRLALRTVYYPQVHLGTISGAGMVRPTSV
TPGLLQVLKSILEKEGPKSLFRGLGPNLVGVAPSRAVYFACYSKAKEQFNGIFVPNSNTVHILSAGSAAF
VTNTLMNPIWMVKTRMQLERKVRGCKQMNTLQCARRVYQTEGVRGFYRGLTASYAGISETIICFAIYESL
KKCLKDAPIVSSTDGAEKSSSGFFGLMAAAAVSKGCASCIAYPHEVIRTRLREEGSKYRSFVQTARLVFR
EEGYLAFYRGLFAQLIRQIPNTAIVLSTYEFIVYLLGERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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