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Report for CCDS2641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2641.1 Public Homo sapiens 3 THRB 24 110 108 CCDS HistoryNCBI Gene:7068Re-query CCDS DB by CCDS ID:2641.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2641.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356447.9 ENSP00000348827.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356447.9Link to Ensembl Protein Viewer:ENSP00000348827.4Re-query CCDS DB by Nucleotide ID:ENST00000356447Re-query CCDS DB by Protein ID:ENSP00000348827
Original member Current member EBI ENST00000396671.7 ENSP00000379904.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396671.7Link to Ensembl Protein Viewer:ENSP00000379904.2Re-query CCDS DB by Nucleotide ID:ENST00000396671Re-query CCDS DB by Protein ID:ENSP00000379904
Original member Current member EBI ENST00000416420.5 ENSP00000414444.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416420.5Link to Ensembl Protein Viewer:ENSP00000414444.1Re-query CCDS DB by Nucleotide ID:ENST00000416420Re-query CCDS DB by Protein ID:ENSP00000414444
Original member Current member EBI ENST00000645139.1 ENSP00000493709.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645139.1Link to Ensembl Protein Viewer:ENSP00000493709.1Re-query CCDS DB by Nucleotide ID:ENST00000645139Re-query CCDS DB by Protein ID:ENSP00000493709
Original member Current member EBI ENST00000642307.1 ENSP00000494618.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642307.1Link to Ensembl Protein Viewer:ENSP00000494618.1Re-query CCDS DB by Nucleotide ID:ENST00000642307Re-query CCDS DB by Protein ID:ENSP00000494618
Original member Current member EBI ENST00000643772.1 ENSP00000496029.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643772.1Link to Ensembl Protein Viewer:ENSP00000496029.1Re-query CCDS DB by Nucleotide ID:ENST00000643772Re-query CCDS DB by Protein ID:ENSP00000496029
Original member Current member EBI ENST00000646432.1 ENSP00000496509.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646432.1Link to Ensembl Protein Viewer:ENSP00000496509.1Re-query CCDS DB by Nucleotide ID:ENST00000646432Re-query CCDS DB by Protein ID:ENSP00000496509
Original member Current member EBI ENST00000644321.1 ENSP00000496616.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644321.1Link to Ensembl Protein Viewer:ENSP00000496616.1Re-query CCDS DB by Nucleotide ID:ENST00000644321Re-query CCDS DB by Protein ID:ENSP00000496616
Original member Current member EBI ENST00000646209.2 ENSP00000496686.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000646209.2Link to Ensembl Protein Viewer:ENSP00000496686.2Re-query CCDS DB by Nucleotide ID:ENST00000646209Re-query CCDS DB by Protein ID:ENSP00000496686
Original member Current member NCBI NM_000461.5 NP_000452.2 Accepted alive Link to Nucleotide Sequence:NM_000461.5Link to Protein Sequence:NP_000452.2Re-query CCDS DB by Nucleotide ID:NM_000461Re-query CCDS DB by Protein ID:NP_000452Link to BLAST:NP_000452.2
Original member Current member NCBI NM_001128176.3 NP_001121648.1 Accepted alive Link to Nucleotide Sequence:NM_001128176.3Link to Protein Sequence:NP_001121648.1Re-query CCDS DB by Nucleotide ID:NM_001128176Re-query CCDS DB by Protein ID:NP_001121648Link to BLAST:NP_001121648.1
Original member Current member NCBI NM_001128177.2 NP_001121649.1 Accepted alive Link to Nucleotide Sequence:NM_001128177.2Link to Protein Sequence:NP_001121649.1Re-query CCDS DB by Nucleotide ID:NM_001128177Re-query CCDS DB by Protein ID:NP_001121649Link to BLAST:NP_001121649.1
Original member Current member NCBI NM_001252634.2 NP_001239563.1 Accepted alive Link to Nucleotide Sequence:NM_001252634.2Link to Protein Sequence:NP_001239563.1Re-query CCDS DB by Nucleotide ID:NM_001252634Re-query CCDS DB by Protein ID:NP_001239563Link to BLAST:NP_001239563.1
Original member Current member NCBI NM_001354708.2 NP_001341637.1 Accepted alive Link to Nucleotide Sequence:NM_001354708.2Link to Protein Sequence:NP_001341637.1Re-query CCDS DB by Nucleotide ID:NM_001354708Re-query CCDS DB by Protein ID:NP_001341637Link to BLAST:NP_001341637.1
Original member Current member NCBI NM_001354709.2 NP_001341638.1 Accepted alive Link to Nucleotide Sequence:NM_001354709.2Link to Protein Sequence:NP_001341638.1Re-query CCDS DB by Nucleotide ID:NM_001354709Re-query CCDS DB by Protein ID:NP_001341638Link to BLAST:NP_001341638.1
Original member Current member NCBI NM_001354710.2 NP_001341639.1 Accepted alive Link to Nucleotide Sequence:NM_001354710.2Link to Protein Sequence:NP_001341639.1Re-query CCDS DB by Nucleotide ID:NM_001354710Re-query CCDS DB by Protein ID:NP_001341639Link to BLAST:NP_001341639.1
Original member Current member NCBI NM_001354711.2 NP_001341640.1 Accepted alive Link to Nucleotide Sequence:NM_001354711.2Link to Protein Sequence:NP_001341640.1Re-query CCDS DB by Nucleotide ID:NM_001354711Re-query CCDS DB by Protein ID:NP_001341640Link to BLAST:NP_001341640.1
Original member Current member NCBI NM_001354712.2 NP_001341641.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001354712.2Link to Protein Sequence:NP_001341641.1Re-query CCDS DB by Nucleotide ID:NM_001354712Re-query CCDS DB by Protein ID:NP_001341641Link to BLAST:NP_001341641.1
Original member Current member NCBI NM_001354713.2 NP_001341642.1 Accepted alive Link to Nucleotide Sequence:NM_001354713.2Link to Protein Sequence:NP_001341642.1Re-query CCDS DB by Nucleotide ID:NM_001354713Re-query CCDS DB by Protein ID:NP_001341642Link to BLAST:NP_001341642.1
Original member Current member NCBI NM_001374822.1 NP_001361751.1 Accepted alive Link to Nucleotide Sequence:NM_001374822.1Link to Protein Sequence:NP_001361751.1Re-query CCDS DB by Nucleotide ID:NM_001374822Re-query CCDS DB by Protein ID:NP_001361751Link to BLAST:NP_001361751.1
Original member Current member NCBI NM_001374823.1 NP_001361752.1 Accepted alive Link to Nucleotide Sequence:NM_001374823.1Link to Protein Sequence:NP_001361752.1Re-query CCDS DB by Nucleotide ID:NM_001374823Re-query CCDS DB by Protein ID:NP_001361752Link to BLAST:NP_001361752.1
Original member Current member NCBI NM_001374824.1 NP_001361753.1 Accepted alive Link to Nucleotide Sequence:NM_001374824.1Link to Protein Sequence:NP_001361753.1Re-query CCDS DB by Nucleotide ID:NM_001374824Re-query CCDS DB by Protein ID:NP_001361753Link to BLAST:NP_001361753.1
Original member Current member NCBI NM_001374825.1 NP_001361754.1 Accepted alive Link to Nucleotide Sequence:NM_001374825.1Link to Protein Sequence:NP_001361754.1Re-query CCDS DB by Nucleotide ID:NM_001374825Re-query CCDS DB by Protein ID:NP_001361754Link to BLAST:NP_001361754.1
Original member Current member NCBI NM_001374826.1 NP_001361755.1 Accepted alive Link to Nucleotide Sequence:NM_001374826.1Link to Protein Sequence:NP_001361755.1Re-query CCDS DB by Nucleotide ID:NM_001374826Re-query CCDS DB by Protein ID:NP_001361755Link to BLAST:NP_001361755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000452.2 461 P10828-1 461 100% 0 0
NP_001121648.1 461 P10828-1 461 100% 0 0
NP_001121649.1 461 P10828-1 461 100% 0 0
NP_001239563.1 461 P10828-1 461 100% 0 0
NP_001341637.1 461 P10828-1 461 100% 0 0
NP_001341638.1 461 P10828-1 461 100% 0 0
NP_001341639.1 461 P10828-1 461 100% 0 0
NP_001341640.1 461 P10828-1 461 100% 0 0
NP_001341641.1 461 P10828-1 461 100% 0 0
NP_001341642.1 461 P10828-1 461 100% 0 0
NP_001361751.1 461 P10828-1 461 100% 0 0
NP_001361752.1 461 P10828-1 461 100% 0 0
NP_001361753.1 461 P10828-1 461 100% 0 0
NP_001361754.1 461 P10828-1 461 100% 0 0
NP_001361755.1 461 P10828-1 461 100% 0 0

Chromosomal Locations for CCDS 2641.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 24122884 24123125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 24127499 24127757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 24133316 24133462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 24143501 24143706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 24146675 24146822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 24152390 24152490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 24190074 24190334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 24228938 24228959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGACTCCCAACAGTATGACAGAAAATGGCCTTACAGCCTGGGACAAACCGAAGCACTGTCCAGACCGAG
AACACGACTGGAAGCTAGTAGGAATGTCTGAAGCCTGCCTACATAGGAAGAGCCATTCAGAGAGGCGCAG
CACGTTGAAAAATGAACAGTCGTCGCCACATCTCATCCAGACCACTTGGACTAGCTCAATATTCCATCTG
GACCATGATGATGTGAACGACCAGAGTGTCTCAAGTGCCCAGACCTTCCAAACGGAGGAGAAGAAATGTA
AAGGGTACATCCCCAGTTACTTAGACAAGGACGAGCTCTGTGTAGTGTGTGGTGACAAAGCCACCGGGTA
TCACTACCGCTGTATCACGTGTGAAGGCTGCAAGGGTTTCTTTAGAAGAACCATTCAGAAAAATCTCCAT
CCATCCTATTCCTGTAAATATGAAGGAAAATGTGTCATAGACAAAGTCACGCGAAATCAGTGCCAGGAAT
GTCGCTTTAAGAAATGCATCTATGTTGGCATGGCAACAGATTTGGTGCTGGATGACAGCAAGAGGCTGGC
CAAGAGGAAGCTGATAGAGGAGAACCGGGAGAAAAGACGGCGGGAAGAGCTGCAGAAGTCCATCGGGCAC
AAGCCAGAGCCCACAGACGAGGAATGGGAGCTCATCAAAACTGTCACCGAAGCCCATGTGGCGACCAACG
CCCAAGGCAGCCACTGGAAGCAAAAACGGAAATTCCTGCCAGAAGACATTGGACAAGCACCAATAGTCAA
TGCCCCAGAAGGTGGAAAGGTTGACTTGGAAGCCTTCAGCCATTTTACAAAAATCATCACACCAGCAATT
ACCAGAGTGGTGGATTTTGCCAAAAAGTTGCCTATGTTTTGTGAGCTGCCATGTGAAGACCAGATCATCC
TCCTCAAAGGCTGCTGCATGGAGATCATGTCCCTTCGCGCTGCTGTGCGCTATGACCCAGAAAGTGAGAC
TTTAACCTTGAATGGGGAAATGGCAGTGACACGGGGCCAGCTGAAAAATGGGGGTCTTGGGGTGGTGTCA
GACGCCATCTTTGACCTGGGCATGTCTCTGTCTTCTTTCAACCTGGATGACACTGAAGTAGCCCTCCTTC
AGGCCGTCCTGCTGATGTCTTCAGATCGCCCGGGGCTTGCCTGTGTTGAGAGAATAGAAAAGTACCAAGA
TAGTTTCCTGCTGGCCTTTGAACACTATATCAATTACCGAAAACACCACGTGACACACTTTTGGCCAAAA
CTCCTGATGAAGGTGACAGATCTGCGGATGATAGGAGCCTGCCATGCCAGCCGCTTCCTGCACATGAAGG
TGGAATGCCCCACAGAACTCTTCCCCCCTTTGTTCTTGGAAGTGTTCGAGGATTAG

Translation (461 aa):
MTPNSMTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTSSIFHL
DHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLH
PSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGH
KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAI
TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVS
DAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPK
LLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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