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Report for CCDS50517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50517.1 Public Mus musculus 2 Potegl 23 108 98 CCDS HistoryNCBI Gene:70981Re-query CCDS DB by CCDS ID:50517.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028113.9 ENSMUSP00000028113.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028113.9Link to Ensembl Protein Viewer:ENSMUSP00000028113.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028113Re-query CCDS DB by Protein ID:ENSMUSP00000028113
Original member Current member NCBI NM_027635.1 NP_081911.1 Accepted alive Link to Nucleotide Sequence:NM_027635.1Link to Protein Sequence:NP_081911.1Re-query CCDS DB by Nucleotide ID:NM_027635Re-query CCDS DB by Protein ID:NP_081911Link to BLAST:NP_081911.1

Chromosomal Locations for CCDS 50517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 23207812 23208104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23212393 23212507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23212660 23212833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23226882 23226988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23230109 23230246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23233853 23233890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23240924 23240954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23245077 23245125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23256931 23257003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23263670 23263743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23266716 23266772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGGAGGAAAGTACAGCCGTGGGGAAGAGAGGAGGCCTTTGGGGTTTCCAGGCTTCTCTGCGCTGTGTT
GCTGTCAGAAAACAAATAGGGAAGAGACCCCCTTGGGTTTCTGCGATATTAAGGCACGGAGAAGTAACCT
GAGCTTTGGAAGGGAGGATCCTGCTTATTTAGACATGGCTTACTTTCCTGACAATGATCTGCACATGGCG
GCCTGTGCAGGCGATTTACCTTTTGTGCGGCTGTACTTTACTCTGGGTAAATACGAAGTCAATCACAGAG
ACAGGGAGAATAGGAATGCCATGCACTTTGCCTGCTTCTATGGACATTTAGAATTGGTGATATATCTCTG
GAGGCGTGGTTGTGAGATTAATGTGTGTGACAATCATAACATCACACCCCTGATGAAGGCTGTCCAAAGC
TGGGAAGATAAAATCGTGTGTTTTCTGCTAGAGCACCATGCTAACCTGCACATTAAAGACAGCATGGGTA
ACACTGCTCTGCACTATGCTGTCTATAGCGGGAATTTAGCAACGGCTGCCAGGCTGCTACAGTACGGAGC
AGATATTGAGGAAAGGACAAAAGACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAG
ATGGCACAATTCTTAGTAAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACAGAGAAGAAATTCTCTCA
TGTATGCTGTAAGGTGTGACTCACCAGTTATGGTCAACCTTATTCTTCAACAAGGTGTCGACATAAATTT
GAAAGATTTATTTGGATGGACTGCTTTACGTTATGCTATTGAAGGTGATCGTGATGTGAGGACAATGCTT
TTGGAGTTAAGAAAGAGAAATCGAGCATTTCAGAGTTCTGAAAACTCTTCAATCAGGCTTATCAACAAAG
CTGATGCTGAAGTGACCTCACCTACGGCAAATGAGAAAGTGATTGAAATGCAAGACCCTTTTACAACCAA
TGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAGCAGAATCTGAACTAGAGGTGTTCTCATTAGAA
GAGGAAATCAGTTACAAAGAGACTATAAATAATCTACAGCAGAACCCAGGACAACGAAGTGCAAAGACAG
ATGCTGCCACTGAAAATCGAAGCCCATAG

Translation (382 aa):
MGGKYSRGEERRPLGFPGFSALCCCQKTNREETPLGFCDIKARRSNLSFGREDPAYLDMAYFPDNDLHMA
ACAGDLPFVRLYFTLGKYEVNHRDRENRNAMHFACFYGHLELVIYLWRRGCEINVCDNHNITPLMKAVQS
WEDKIVCFLLEHHANLHIKDSMGNTALHYAVYSGNLATAARLLQYGADIEERTKDNLTPLLLALRENRLK
MAQFLVRMEASVHAVDSQRRNSLMYAVRCDSPVMVNLILQQGVDINLKDLFGWTALRYAIEGDRDVRTML
LELRKRNRAFQSSENSSIRLINKADAEVTSPTANEKVIEMQDPFTTNEASVEKTQTRRPAESELEVFSLE
EEISYKETINNLQQNPGQRSAKTDAATENRSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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