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Report for CCDS19360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19360.1 Public Mus musculus 5 Clock 23 108 98 CCDS HistoryNCBI Gene:12753Re-query CCDS DB by CCDS ID:19360.1Re-query CCDS DB by GeneID:12753See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075159.4 ENSMUSP00000074656.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075159.4Link to Ensembl Protein Viewer:ENSMUSP00000074656.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000075159Re-query CCDS DB by Protein ID:ENSMUSP00000074656
Original member Current member EBI ENSMUST00000202651.3 ENSMUSP00000143939.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202651.3Link to Ensembl Protein Viewer:ENSMUSP00000143939.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202651Re-query CCDS DB by Protein ID:ENSMUSP00000143939
Original member NCBI NM_001289826.1 NP_001276755.1 Updated not alive Link to Nucleotide Sequence:NM_001289826.1Link to Protein Sequence:NP_001276755.1Re-query CCDS DB by Nucleotide ID:NM_001289826Re-query CCDS DB by Protein ID:NP_001276755
Current member NCBI NM_001289826.2 NP_001276755.1 Accepted alive Link to Nucleotide Sequence:NM_001289826.2Link to Protein Sequence:NP_001276755.1Re-query CCDS DB by Nucleotide ID:NM_001289826Re-query CCDS DB by Protein ID:NP_001276755Link to BLAST:NP_001276755.1
Original member NCBI NM_007715.6 NP_031741.1 Updated not alive Link to Nucleotide Sequence:NM_007715.6Link to Protein Sequence:NP_031741.1Re-query CCDS DB by Nucleotide ID:NM_007715Re-query CCDS DB by Protein ID:NP_031741
Current member NCBI NM_007715.7 NP_031741.1 Accepted alive Link to Nucleotide Sequence:NM_007715.7Link to Protein Sequence:NP_031741.1Re-query CCDS DB by Nucleotide ID:NM_007715Re-query CCDS DB by Protein ID:NP_031741Link to BLAST:NP_031741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276755.1 855 O08785-1 855 100% 0 0
NP_031741.1 855 O08785-1 855 100% 0 0

Chromosomal Locations for CCDS 19360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76216699 76216878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76226933 76227227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76229358 76229563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76230165 76230359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76231396 76231548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76235766 76235855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76236282 76236382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76237021 76237162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76240871 76240946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76241870 76242017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76242782 76242888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76243079 76243161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76245196 76245314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76245422 76245535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76248342 76248462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76254374 76254463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76262675 76262766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76265791 76265939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76266357 76266416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76266800 76266846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGGTGTTTACCGTAAGCTGTAGTAAAATGAGCTCAATTGTTGACAGAGATGACAGTAGTATTTTTGATG
GATTGGTGGAAGAAGATGACAAGGACAAAGCAAAAAGAGTATCTAGAAACAAATCAGAAAAGAAACGTAG
AGATCAGTTCAATGTCCTCATTAAGGAGCTGGGGTCTATGCTTCCTGGTAACGCGAGAAAGATGGACAAG
TCTACTGTTCTACAGAAGAGCATTGATTTTTTGCGCAAACATAAAGAGACCACTGCACAGTCAGATGCTA
GTGAGATTCGACAGGACTGGAAACCCACATTCCTTAGTAATGAAGAGTTTACACAGTTAATGTTAGAGGC
TCTTGATGGTTTTTTTTTAGCGATCATGACAGATGGAAGTATAATATATGTATCTGAGAGTGTAACTTCG
TTACTTGAACATTTACCATCTGATCTTGTGGATCAAAGTATATTTAATTTTATCCCAGAGGGAGAACATT
CAGAGGTTTATAAGATACTCTCTACTCATCTGCTGGAAAGTGACTCATTAACCCCTGAGTACTTAAAATC
AAAAAATCAGTTAGAATTCTGTTGTCACATGCTTCGAGGAACAATAGACCCAAAGGAGCCATCCACCTAT
GAATATGTGAGATTTATAGGAAATTTTAAATCTTTAACCAGTGTATCAACTTCAACACACAATGGTTTTG
AAGGAACTATACAACGCACACATAGGCCTTCTTATGAAGATAGAGTTTGTTTTGTAGCTACTGTCAGATT
AGCTACACCTCAGTTCATCAAGGAAATGTGTACTGTTGAAGAACCAAATGAAGAGTTTACATCTAGACAC
AGTTTAGAATGGAAGTTTCTATTTTTAGATCACAGGGCACCACCAATAATAGGCTATTTGCCATTTGAAG
TCTTGGGAACATCAGGCTATGATTACTATCATGTGGATGACCTAGAAAATCTGGCAAAATGTCACGAGCA
CTTAATGCAATATGGAAAAGGCAAATCGTGTTACTATAGATTCCTGACCAAAGGCCAGCAGTGGATATGG
CTTCAGACTCATTATTATATTACTTACCATCAGTGGAATTCAAGGCCAGAGTTCATTGTTTGTACTCACA
CTGTAGTAAGTTATGCAGAAGTTAGGGCTGAAAGACGGCGAGAACTTGGCATTGAAGAGTCTCTTCCTGA
GACAGCTGCTGACAAAAGCCAAGATTCTGGGTCTGACAATCGTATCAACACAGTGAGTCTCAAGGAAGCA
CTGGAAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCCTCTAGAAGCTCACGAAAGTCATCTCACACCG
CAGTCTCAGACCCTTCCTCCACACCGACAAAGATCCCTACTGATACTAGCACTCCTCCCAGACAGCATTT
GCCAGCTCATGAAAAGATGACACAGCGGAGGTCGTCCTTCAGCAGTCAGTCCATAAACTCCCAGTCAGTT
GGTCCATCATTAACACAGCCAGCGATGTCTCAAGCTGCAAATTTACCAATTCCACAAGGCATGTCACAGT
TTCAGTTTTCAGCTCAGTTAGGAGCCATGCAGCATCTAAAAGACCAGCTAGAGCAGCGGACACGGATGAT
AGAGGCAAATATTCATCGGCAGCAAGAAGAACTAAGGAAAATTCAAGAGCAACTTCAGATGGTCCATGGT
CAAGGGCTACAGATGTTTTTGCAGCAATCAAACCCTGGATTGAATTTTGGTTCTGTTCAACTTTCCTCTG
GAAATTCTAATATCCAGCAACTCACACCTGTAAATATGCAAGGCCAGGTTGTCCCTGCTAACCAGGTTCA
GAGTGGACATATCAGCACAGGCCAGCACATGATACAGCAACAGACTTTACAAAGTACATCAACTCAGCAG
AGTCAACAGAGTGTAATGAGTGGACACAGTCAGCAGACGTCTCTTCCAAGTCAGACACCGAGCACTCTCA
CAGCCCCACTGTACAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCATCCAG
TATGCCACAGAACAGTACCCAGAGTGCTACAGTCACTACGTTCACTCAGGACAGACAGATAAGATTTTCT
CAAGGTCAGCAACTTGTGACCAAATTAGTGACTGCTCCTGTAGCTTGTGGGGCCGTCATGGTACCAAGTA
CCATGCTTATGGGTCAGGTGGTGACTGCCTATCCTACCTTCGCCACACAACAGCAGCAGGCACAGACATT
ATCGGTAACACAACAGCAGCAGCAGCAGCAGCAGCAGCCACCACAGCAACAGCAACAACAACAGCAGAGT
TCCCAGGAACAGCAGCTTCCTTCAGTTCAGCAGCCAGCTCAGGCCCAGCTGGGCCAGCCACCACAGCAGT
TCTTACAGACATCTAGGTTGCTCCACGGGAATCCTTCGACACAGCTCATCCTCTCTGCTGCCTTTCCACT
ACAACAGAGCACTTTCCCTCCTTCGCACCACCAGCAACACCAGCCTCAGCAGCAACAGCAGCTTCCTCGG
CACAGGACTGACAGCCTGACTGACCCTTCCAAGGTCCAGCCACAGTAG

Translation (855 aa):
MVFTVSCSKMSSIVDRDDSSIFDGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDK
STVLQKSIDFLRKHKETTAQSDASEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTS
LLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKNQLEFCCHMLRGTIDPKEPSTY
EYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEFTSRH
SLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIW
LQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSDNRINTVSLKEA
LERFDHSPTPSASSRSSRKSSHTAVSDPSSTPTKIPTDTSTPPRQHLPAHEKMTQRRSSFSSQSINSQSV
GPSLTQPAMSQAANLPIPQGMSQFQFSAQLGAMQHLKDQLEQRTRMIEANIHRQQEELRKIQEQLQMVHG
QGLQMFLQQSNPGLNFGSVQLSSGNSNIQQLTPVNMQGQVVPANQVQSGHISTGQHMIQQQTLQSTSTQQ
SQQSVMSGHSQQTSLPSQTPSTLTAPLYNTMVISQPAAGSMVQIPSSMPQNSTQSATVTTFTQDRQIRFS
QGQQLVTKLVTAPVACGAVMVPSTMLMGQVVTAYPTFATQQQQAQTLSVTQQQQQQQQQPPQQQQQQQQS
SQEQQLPSVQQPAQAQLGQPPQQFLQTSRLLHGNPSTQLILSAAFPLQQSTFPPSHHQQHQPQQQQQLPR
HRTDSLTDPSKVQPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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