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Report for CCDS6726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6726.1 Public Homo sapiens 9 TMOD1 24 110 108 CCDS HistoryNCBI Gene:7111Re-query CCDS DB by CCDS ID:6726.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6726.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259365.9 ENSP00000259365.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259365.9Link to Ensembl Protein Viewer:ENSP00000259365.3Re-query CCDS DB by Nucleotide ID:ENST00000259365Re-query CCDS DB by Protein ID:ENSP00000259365
Original member Current member EBI ENST00000395211.6 ENSP00000378637.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395211.6Link to Ensembl Protein Viewer:ENSP00000378637.2Re-query CCDS DB by Nucleotide ID:ENST00000395211Re-query CCDS DB by Protein ID:ENSP00000378637
Original member Current member NCBI NM_001166116.2 NP_001159588.1 Accepted alive Link to Nucleotide Sequence:NM_001166116.2Link to Protein Sequence:NP_001159588.1Re-query CCDS DB by Nucleotide ID:NM_001166116Re-query CCDS DB by Protein ID:NP_001159588Link to BLAST:NP_001159588.1
Original member Current member NCBI NM_003275.4 NP_003266.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003275.4Link to Protein Sequence:NP_003266.1Re-query CCDS DB by Nucleotide ID:NM_003275Re-query CCDS DB by Protein ID:NP_003266Link to BLAST:NP_003266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159588.1 359 P28289-1 359 100% 0 0
NP_003266.1 359 P28289-1 359 100% 0 0

Chromosomal Locations for CCDS 6726.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 97524189 97524308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97546185 97546341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97553281 97553400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97562732 97562821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97564038 97564168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97565848 97565955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97568894 97569037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97591291 97591435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97599634 97599698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGTCGTACAGACGAGAACTAGAGAAATACCGTGACCTGGATGAAGATGAAATCCTTGGAGCCCTAACAG
AG
GAAGAGCTGAGGACCCTGGAAAATGAGCTGGATGAGCTGGACCCTGATAATGCACTGCTGCCTGCAGG
C
CTGAGGCAGAAGGATCAGACCACCAAGGCGCCCACGGGCCCCTTTAAAAGAGAGGAGCTCTTGGATCAC
TTG
GAAAAGCAAGCAAAGGAGTTTAAGGACCGAGAAGATCTGGTCCCCTACACAGGGGAAAAACGAGGAA
AG
GTCTGGGTTCCTAAGCAGAAGCCACTGGATCCTGTGCTGGAAAGTGTGACGCTGGAACCGGAGCTGGA
G
GAAGCCTTGGCAAATGCTTCAGATGCAGAACTCTGTGACATTGCAGCGATCCTGGGCATGCACACGCTC
ATG
AGTAACCAGCAGTACTACCAGGCCCTGAGCAGCAGCTCCATCATGAACAAGGAGGGGCTCAACAGCG
TG
ATTAAACCCACACAATACAAGCCTGTGCCCGACGAAGAACCAAATTCAACAGACGTAGAGGAAACGCT
G
GAACGGATAAAGAACAACGACCCAAAACTTGAAGAAGTTAACCTCAATAATATCCGGAATATCCCCATC
CCC
ACCCTCAAGGCATATGCAGAAGCCCTGAAAGAAAACTCATATGTGAAGAAGTTCAGCATCGTGGGGA
CA
CGGAGTAATGACCCCGTGGCGTATGCCCTTGCTGAGATGCTCAAGGAGAACAAGGTGTTGAAGACACT
G
AATGTGGAATCCAACTTCATTTCTGGAGCTGGGATTCTGCGCCTGGTAGAAGCCCTCCCATACAACACT
TCT
CTGGTGGAAATGAAAATTGACAACCAGAGCCAGCCCCTGGGCAACAAAGTGGAAATGGAGATTGTGA
GC
ATGTTGGAAAAAAACGCAACACTTCTCAAATTCGGCTACCACTTTACCCAGCAAGGACCCCGGCTTCG
G
GCATCCAACGCAATGATGAACAACAATGACCTTGTGAGGAAGAGGAGGCTTGCGGACCTGACTGGGCCC
ATC
ATTCCCAAGTGCCGGAGTGGTGTCTAG


Translation (359 aa):
MSYRRELEKYRDLDEDEILGALTEEELRTLENELDELDPDNALLPAGLRQKDQTTKAPTGPFKREELLDH
L
EKQAKEFKDREDLVPYTGEKR
GKVWVPKQKPLDPVLESVTLEPELEEALANASDAELCDIAAILGMHTL
M
SNQQYYQALSSSSIMNKEGLN
SVIKPTQYKPVPDEEPNSTDVEETLERIKNNDPKLEEVNLNNIRNIPI
P
TLKAYAEALKENSYVKKFSIVGTRSNDPVAY
ALAEMLKENKVLKTLNVESNFISGAGILRLVEALPYNT
S
LVEMKIDNQ
SQPLGNKVEMEIVSMLEKNATLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRLADLTGP
I
IPKCRSGV




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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