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Report for CCDS45410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45410.1 Public Homo sapiens 16 TNP2 24 110 108 CCDS HistoryNCBI Gene:7142Re-query CCDS DB by CCDS ID:45410.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312693.4 ENSP00000325738.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312693.4Link to Ensembl Protein Viewer:ENSP00000325738.3Re-query CCDS DB by Nucleotide ID:ENST00000312693Re-query CCDS DB by Protein ID:ENSP00000325738
Original member Current member NCBI NM_005425.5 NP_005416.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005425.5Link to Protein Sequence:NP_005416.1Re-query CCDS DB by Nucleotide ID:NM_005425Re-query CCDS DB by Protein ID:NP_005416Link to BLAST:NP_005416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005416.1 138 Q05952 138 100% 0 0

Chromosomal Locations for CCDS 45410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 11267996 11268012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11268863 11269262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGGACACCCAGACTCACAGCCTTCCTATCACCCACACTCAGCTCCATAGCAACTCTCAGCCCCAAAGCC
GCACCTGCACCCGCCATTGCCAAACCTTCAGCCAGAGTTGCAGACAGAGCCATCGTGGCAGCCGGAGCCA
GAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGGCCACCAGAGC
CAGAGTCCCAACACTAGTCCACCACCAAAGCGCCACAAAAAGACTATGAACTCCCACCACTCTCCCATGC
GGCCCACCATCCTGCACTGCCGCTGCCCCAAGAACAGAAAGAACTTGGAAGGCAAGCTGAAAAAGAAAAA
AATGGCCAAGAGGATCCAGCAGGTGTACAAAACCAAGACGCGGAGCTCAGGATGGAAATCCAACTAA

Translation (138 aa):
MDTQTHSLPITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQS
QSPNTSPPPKRHKKTMNSHHSPMRPTILHCRCPKNRKNLEGKLKKKKMAKRIQQVYKTKTRSSGWKSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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