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Report for CCDS39177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39177.1 Public Mus musculus 5 Antxr2 23 108 98 CCDS HistoryNCBI Gene:71914Re-query CCDS DB by CCDS ID:39177.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031281.13 ENSMUSP00000031281.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031281.13Link to Ensembl Protein Viewer:ENSMUSP00000031281.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031281Re-query CCDS DB by Protein ID:ENSMUSP00000031281
Original member NCBI NM_133738.2 NP_598499.1 Updated not alive Link to Nucleotide Sequence:NM_133738.2Link to Protein Sequence:NP_598499.1Re-query CCDS DB by Nucleotide ID:NM_133738Re-query CCDS DB by Protein ID:NP_598499
Current member NCBI NM_133738.3 NP_598499.1 Accepted alive Link to Nucleotide Sequence:NM_133738.3Link to Protein Sequence:NP_598499.1Re-query CCDS DB by Nucleotide ID:NM_133738Re-query CCDS DB by Protein ID:NP_598499Link to BLAST:NP_598499.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598499.1 487 Q6DFX2 487 100% 0 0

Chromosomal Locations for CCDS 39177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 97886562 97886600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97938087 97938167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97938403 97938567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97948245 97948340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97949170 97949211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97960610 97960705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97965682 97965760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97975321 97975390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97977601 97977699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97979974 97980034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98003227 98003307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98004056 98004124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98004265 98004372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98004859 98004940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98027471 98027542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98029584 98029655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98030398 98030549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGTGGCCGGTCGGTCCCGGGCGCGCAGCCCTGGGAGCTGGCTGTTCCCTGGCCTGTGGTTGTTGGCTG
TGGGCGGTCCGGGGTCGTTGCTGCAAGCCCAGGAGCAGCCCTCTTGCAAAAAAGCCTTCGATTTGTACTT
CGTACTGGACAAGTCTGGCAGTGTAGCAAATAACTGGATTGAAATTTATAATTTTGTCCACCAGCTGACA
GAGAGATTTGTGAGCCCTGAAATGAGATTGTCCTTCATTGTGTTTTCTTCCCAAGCAACCATTATTTTGC
CATTAACTGGAGACAGGTACAAAATTGGCAAAGGACTGGAGGATTTAAAGGCCGTTAAGCCAGTTGGAGA
AACATACATCCATGAAGGACTAAAGCTTGCAAACGAACAAATTCAAAATGCAGGAGGCTTAAAAGCCTCC
AGTATCATAATTGCTTTGACGGACGGTAAGCTGGACGGCCTGGTACCATCTTATGCAGAGAACGAGGCAA
AGAAGTCCAGGTCACTTGGCGCTAGTGTTTACTGCGTTGGGGTCCTTGATTTTGAACAAGCTCAGCTGGA
AAGAATTGCTGATTCCAAGGACCAGGTTTTCCCTGTCAAAGGTGGATTTCAAGCTCTCAAAGGCATCATC
AACTCTATATTAGCTCAATCATGTACTGAAATCCTGGAATTGAGTCCTTCAAGTGTCTGTGTAGGGGAGA
AATTTCAAGTTGTTCTGACTGGAAGAGCAGTCACGTCGATCAGTCACGATGGCAGTGTCCTCTGTACATT
CACTGCAAACAGCACATATACAAAGAGTGAGAAGCCAGTGAGCATTCAGCCAAGTTCCATCCTTTGTCCT
GCACCTGTCCTGAACAAAGATGGAGAAACTCTTGAAGTTTCAATCAGCTATAATGATGGGAAGTCTGCTG
TCTCAAGATCCTTAACAATCACAGCCACAGAATGTACCAATGGGATTGCAGCCATCGTAGCTATTTTGGT
GTTGTTGCTGCTCTTGGGTGCTGCCTTGATGTGGTGGTTTTGGCCCCTTTGCTGCAAAGTGGTTATCAAG
GACCCTCCCCCACCACCTTCTGCACCAATGGAGGAGGAGGAGGAGGATCCTTTGCCCAACAAGAAGTGGC
CGACTGTGGACGCTTCCTACTACGGAGGTCGAGGTGTTGGAGGAATTAAAAGGATGGAGGTCCGCTGGGG
AGATAAAGGATCTACAGAGGAAGGTGCAAGGCTAGAGAAAGCAAAAAATGCTGTGGTGATGGTCCCTGAA
GAAGAGATCCCCATCCCATCCAGACCACCTCGACCCAGACCCACACACCAGGCACCTCAGACAAAGTGGT
ACACGCCAATCAAGGGTCGTTTGGATGCACTCTGGGCTTTGATCATGAAGCAGTATGACCGGGTGTCCTT
GATGAGACCCCAGGAAGGTGATGAGGGCCGATGCATAAACTTCTCCCGGGTTCCACATCAATAA

Translation (487 aa):
MVAGRSRARSPGSWLFPGLWLLAVGGPGSLLQAQEQPSCKKAFDLYFVLDKSGSVANNWIEIYNFVHQLT
ERFVSPEMRLSFIVFSSQATIILPLTGDRYKIGKGLEDLKAVKPVGETYIHEGLKLANEQIQNAGGLKAS
SIIIALTDGKLDGLVPSYAENEAKKSRSLGASVYCVGVLDFEQAQLERIADSKDQVFPVKGGFQALKGII
NSILAQSCTEILELSPSSVCVGEKFQVVLTGRAVTSISHDGSVLCTFTANSTYTKSEKPVSIQPSSILCP
APVLNKDGETLEVSISYNDGKSAVSRSLTITATECTNGIAAIVAILVLLLLLGAALMWWFWPLCCKVVIK
DPPPPPSAPMEEEEEDPLPNKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVMVPE
EEIPIPSRPPRPRPTHQAPQTKWYTPIKGRLDALWALIMKQYDRVSLMRPQEGDEGRCINFSRVPHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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