NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22414.1 Public Mus musculus 8 1700030K09Rik 23 108 98 CCDS HistoryNCBI Gene:72254Re-query CCDS DB by CCDS ID:22414.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064853.12 ENSMUSP00000063244.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064853.12Link to Ensembl Protein Viewer:ENSMUSP00000063244.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064853Re-query CCDS DB by Protein ID:ENSMUSP00000063244
Original member Current member NCBI NM_028170.2 NP_082446.2 Accepted alive Link to Nucleotide Sequence:NM_028170.2Link to Protein Sequence:NP_082446.2Re-query CCDS DB by Nucleotide ID:NM_028170Re-query CCDS DB by Protein ID:NP_082446Link to BLAST:NP_082446.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082446.2 641 Q922C1 641 100% 0 0

Chromosomal Locations for CCDS 22414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72444751 72445470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72449450 72449741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72451359 72451432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72455114 72455567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72457973 72458068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72458603 72458769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72460029 72460151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGCTTCCACAAGAAGACCCTTTGGCCCTCCACGTAGTGGTTTTGACTTAAGGGATATGTTCTTAGATA
GCTCGAGGATGGAAGAGATCAGAAACTTACAAGCCCGAAGTCTTGGCCAAGTGACACCTGGGCAGAGCAG
AATCTTAAAGAGAAACCAAACGATGGACGAGAAATATTTGATGCCCAAAGAGGAGGCCATGGCAGGGAGG
GGGGTGAGTCTGGGCTTGAGGCCTCCCACCATCTCCTCCAAGACCAGAGCCAGTGAGGCCCTTAGGAAAC
TGGCCCAGATTGAAACCAAGATCCTGAATCGGAAGCAGGTGCCCATGGCTTGGTCTGATGTGGAGTCTGA
CTCCACATCCATCGAGCAGAGTCTTCCTAAGAGGACAGGTGCAGCTTCTGTTTCTTCCCAGTACCCACAC
AGAACTTTCCAGAAACAAGTGAACAAAACATGTGTGTCAAAGAGCGATGGGCCGAGTGGTAACGGTAGCA
GGTTTCTGAAGAAGAAGGAGCTGCCCACTGAAGCGAGGTCCCCAGGGCTGGCAGTGGGGACAGGGAAGCA
AGCTCTGCTGCCCACAAAGAAAGAATCTGCCAGTGACGAGGAGGAGGAAATGCTACTGCTTAGAAGCTTG
ATGGAATCTTCTAGAGAAAAAGAAGCAAATAGAAACCAGGAGCTCCCTGGCTCCAGTGTCAGCAGGAGCA
ACCTTGGAAAGGTGTTCTTGGATCCAACTCCAGATCAGCCAGGAGTCCTGTCTCTACTCAGTGTTGACCA
GTCCAGCTTAAAGTCTCCTCGGCCCATACAGTCGACTCGCGTTGGCTTGAGAACTCACTCCCGACAGGCG
AGCAGTGCTGGGGACACAGTCTCCATCACAGCCTCACCTCCCATCCTTGATGACTTCTCCAAATCAGCAT
CTTCAAAGATGGGATGCATCAAGCTGGCTTCCTCCCCCAGCAGGACGGAGTTGGAGTCTTCTGAGGAACC
AGTCTCAGAAGCTGCTGCTGACAGCCTCCATGATTTTAGAATTAATATTTTGTCGATTGATGATCTGGTT
CTGGCTGACGGAGACAAATCAGATGGGGACCAGAGAGAGGAAGACTGTGTAAGGGAAGGGATTTCAGTCA
GAAGCTCCTCACCCACATCACCTACTCGACTGGAAGCGCAGATGTGGCCCAAGAATTGTGTGTTTCAGGG
CACAGCCACCGTGGTTGGGGATGGAGAGGGTCTTACCACTGAGAGTGACGTCTCAGAGCCCCCGGGGACC
AGCTCCTCAGCAGCTGTCCAGTCTCACAGTATGTCCAGGGCCCTCACTGCAAGCCCAGCTTACTCAGAGG
ATTTTGAGCAGTTCTCTGGTCCCTTGGCCTTGGAGGAGTCGCTTGACAGGACACTGGACACTTTGTCAAA
GTTTTCTTCCAGTGGTCAGACAGATATCGTTGCCAGACAACCTCTATCAAGGACAGAATGGGGCAGGGGT
GTGACCAGAGTTGTGAAGGAGACAGCTGTGCAGACACTTGATCCTGCCTTTGCCTACCAGTGGAGCAAGG
CTGGTGGCATAGCAGCTGTTGGACCTGCCCTTGGAGGTGCTTATGTGGACCCAGCACCCATCGCCAGTCA
CATTGTCAGCGCAGACGCCATAGAAGCCCTGACAGCCTACAGCCCAGCAGTTCTGGCGTTGAATGACATG
CTAAAGCAACAACTGAGCCTGACGCAGCAGTTCATCGAGGCCAGCCATCAACTACATGGTTCTCTCCTGC
AGTCCCTGGATGGGGACTCATTTCACTACCATACCTTGGAGGAAGCAAAAGAGTACATCAGATGCCACAG
GCCTGCACCCCTGACCATGGAGGCTGCCCTGCAGGAGGTGAGGGAGGAGCTCCAAGTCCCAGCAAGTGAG
GCTTGCCTGGGTACCTGTCCACCTCGGAATCAATGA

Translation (641 aa):
MASTRRPFGPPRSGFDLRDMFLDSSRMEEIRNLQARSLGQVTPGQSRILKRNQTMDEKYLMPKEEAMAGR
GVSLGLRPPTISSKTRASEALRKLAQIETKILNRKQVPMAWSDVESDSTSIEQSLPKRTGAASVSSQYPH
RTFQKQVNKTCVSKSDGPSGNGSRFLKKKELPTEARSPGLAVGTGKQALLPTKKESASDEEEEMLLLRSL
MESSREKEANRNQELPGSSVSRSNLGKVFLDPTPDQPGVLSLLSVDQSSLKSPRPIQSTRVGLRTHSRQA
SSAGDTVSITASPPILDDFSKSASSKMGCIKLASSPSRTELESSEEPVSEAAADSLHDFRINILSIDDLV
LADGDKSDGDQREEDCVREGISVRSSSPTSPTRLEAQMWPKNCVFQGTATVVGDGEGLTTESDVSEPPGT
SSSAAVQSHSMSRALTASPAYSEDFEQFSGPLALEESLDRTLDTLSKFSSSGQTDIVARQPLSRTEWGRG
VTRVVKETAVQTLDPAFAYQWSKAGGIAAVGPALGGAYVDPAPIASHIVSADAIEALTAYSPAVLALNDM
LKQQLSLTQQFIEASHQLHGSLLQSLDGDSFHYHTLEEAKEYIRCHRPAPLTMEAALQEVREELQVPASE
ACLGTCPPRNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH