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Report for CCDS30688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30688.1 Public Homo sapiens 1 SCMH1 24 110 108 CCDS HistoryNCBI Gene:22955Re-query CCDS DB by CCDS ID:30688.1Re-query CCDS DB by GeneID:22955See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326197.11 ENSP00000318094.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000326197.11Link to Ensembl Protein Viewer:ENSP00000318094.7Re-query CCDS DB by Nucleotide ID:ENST00000326197Re-query CCDS DB by Protein ID:ENSP00000318094
Original member Current member NCBI NM_001031694.3 NP_001026864.1 Accepted alive Link to Nucleotide Sequence:NM_001031694.3Link to Protein Sequence:NP_001026864.1Re-query CCDS DB by Nucleotide ID:NM_001031694Re-query CCDS DB by Protein ID:NP_001026864Link to BLAST:NP_001026864.1
Original member Current member NCBI NM_001394300.1 NP_001381229.1 Accepted alive Link to Nucleotide Sequence:NM_001394300.1Link to Protein Sequence:NP_001381229.1Re-query CCDS DB by Nucleotide ID:NM_001394300Re-query CCDS DB by Protein ID:NP_001381229Link to BLAST:NP_001381229.1
Original member Current member NCBI NM_001394301.1 NP_001381230.1 Accepted alive Link to Nucleotide Sequence:NM_001394301.1Link to Protein Sequence:NP_001381230.1Re-query CCDS DB by Nucleotide ID:NM_001394301Re-query CCDS DB by Protein ID:NP_001381230Link to BLAST:NP_001381230.1
Original member Current member NCBI NM_001394302.1 NP_001381231.1 Accepted alive Link to Nucleotide Sequence:NM_001394302.1Link to Protein Sequence:NP_001381231.1Re-query CCDS DB by Nucleotide ID:NM_001394302Re-query CCDS DB by Protein ID:NP_001381231Link to BLAST:NP_001381231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026864.1 660 Q96GD3-1 660 100% 0 0
NP_001381229.1 660 Q96GD3-1 660 100% 0 0
NP_001381230.1 660 Q96GD3-1 660 100% 0 0
NP_001381231.1 660 Q96GD3-1 660 100% 0 0

Chromosomal Locations for CCDS 30688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 41028194 41028319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41028584 41028726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41033983 41034048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41037362 41037541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41046407 41046598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41048690 41048890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41070595 41070721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41075219 41075451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41113283 41113526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41116922 41117010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41142878 41143112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41151614 41151684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41152599 41152674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGCTGGTTTGCTACAGTGTTTTAGCTTGTGAGATTCTCTGGGACCTTCCCTGCTCCATCATGGGGTCAC
CTCTAGGTCATTTTACCTGGGACAAATACCTAAAAGAAACATGTTCAGTCCCAGCGCCTGTCCATTGCTT
CAAGCAGTCCTACACACCTCCAAGCAACGAGTTCAAGATCAGTATGAAATTGGAAGCACAGGACCCCAGG
AACACCACATCCACCTGTATTGCCACAGTAGTTGGACTGACAGGTGCCCGCCTTCGCCTGCGCCTTGATG
GGAGCGACAACAAAAATGACTTCTGGCGGCTGGTTGACTCAGCTGAAATCCAGCCTATTGGGAACTGTGA
AAAGAATGGGGGTATGCTACAGCCACCTCTTGGATTTCGGCTGAATGCGTCTTCTTGGCCCATGTTCCTT
TTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAGGATTTTCCACAAGGAGCCACCATCGCCTTCCC
ACAACTTCTTCAAAATGGGAATGAAGCTAGAAGCTGTGGACAGGAAGAACCCTCATTTCATTTGCCCAGC
CACTATTGGGGAGGTTCGGGGCTCAGAGGTGCTTGTCACTTTTGATGGGTGGCGAGGGGCCTTTGACTAC
TGGTGCCGCTTCGACTCCCGAGACATCTTCCCTGTGGGCTGGTGTTCCTTGACTGGAGACAACCTGCAGC
CTCCTGGCACCAAAGTTGTGATTCCAAAGAATCCCTATCCTGCCTCCGATGTGAATACTGAGAAGCCCAG
CATCCACAGCAGCACCAAAACTGTCTTGGAACATCAACCAGGGCAGAGGGGGCGTAAACCAGGAAAGAAG
CGGGGCCGGACACCCAAGACCCTAATTTCCCATCCCATCTCTGCCCCATCCAAGACAGCTGAACCTTTGA
AATTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGAGGAAACCTCGGACTTTGCTGAACCCACCACC
TGCCTCACCAACAACCAGCACTCCTGAACCGGATACCAGCACTGTACCCCAGGATGCTGCCACCATCCCC
AGCTCAGCCATGCAGGCCCCAACAGTTTGTATCTACTTGAACAAGAATGGCAGCACAGGCCCCCACTTAG
ATAAGAAGAAGGTCCAGCAACTCCCTGACCATTTTGGACCAGCCCGTGCCTCTGTGGTGTTGCAGCAGGC
TGTCCAGGCCTGTATCGACTGTGCTTATCACCAGAAAACCGTCTTCAGCTTCCTCAAGCAAGGCCATGGT
GGTGAGGTTATCTCAGCCGTGTTTGACCGGGAACAGCATACCCTCAACCTCCCAGCAGTCAACAGCATCA
CCTACGTCCTCCGCTTCCTGGAGAAACTCTGCCACAACCTTCGTAGTGACAATCTGTTTGGCAACCAGCC
CTTTACACAGACTCACTTGTCACTCACTGCCATAGAGTACAGCCACAGCCACGACAGGTACCTACCAGGT
GAAACCTTTGTCCTGGGGAATAGTCTGGCCCGCTCCTTGGAACCACACTCAGACTCAATGGACTCTGCCT
CAAATCCCACCAACCTTGTCAGCACCTCCCAAAGGCACCGGCCCTTGCTTTCATCCTGTGGCCTCCCACC
AAGCACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGAGTGTTAAAAGGATCAAATGAAAGAAGGGAT
ATGGAATCATTTTGGAAACTAAATCGTTCCCCAGGGTCGGACCGATACCTGGAGAGCCGCGATGCCTCTC
GACTGAGTGGCCGGGACCCCTCCTCATGGACAGTCGAGGATGTGATGCAGTTTGTCCGGGAAGCTGATCC
TCAGCTTGGACCCCACGCTGACCTGTTTCGCAAACACGAGATCGATGGCAAGGCCCTGCTGCTGCTGCGC
AGTGACATGATGATGAAGTACATGGGCCTGAAGCTGGGGCCTGCACTCAAGCTCTCCTACCACATTGACC
GGCTGAAGCAGGGCAAGTTCTGA

Translation (660 aa):
MLVCYSVLACEILWDLPCSIMGSPLGHFTWDKYLKETCSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPR
NTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFL
LKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDY
WCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPYPASDVNTEKPSIHSSTKTVLEHQPGQRGRKPGKK
RGRTPKTLISHPISAPSKTAEPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTSTVPQDAATIP
SSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHG
GEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTAIEYSHSHDRYLPG
ETFVLGNSLARSLEPHSDSMDSASNPTNLVSTSQRHRPLLSSCGLPPSTASAVRRLCSRGVLKGSNERRD
MESFWKLNRSPGSDRYLESRDASRLSGRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLR
SDMMMKYMGLKLGPALKLSYHIDRLKQGKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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