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Report for CCDS1596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1596.1 Public Homo sapiens 1 TSNAX 24 110 108 CCDS HistoryNCBI Gene:7257Re-query CCDS DB by CCDS ID:1596.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1596.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366639.9 ENSP00000355599.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366639.9Link to Ensembl Protein Viewer:ENSP00000355599.3Re-query CCDS DB by Nucleotide ID:ENST00000366639Re-query CCDS DB by Protein ID:ENSP00000355599
Original member Current member NCBI NM_005999.3 NP_005990.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005999.3Link to Protein Sequence:NP_005990.1Re-query CCDS DB by Nucleotide ID:NM_005999Re-query CCDS DB by Protein ID:NP_005990Link to BLAST:NP_005990.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005990.1 290 Q99598 290 100% 0 0

Chromosomal Locations for CCDS 1596.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 231528811 231528826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231529255 231529359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231537213 231537327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231542481 231542611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231561128 231561255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231564528 231564905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACCAAAGAA
GAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTTGA
TGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACA
ATTTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAAT
TGGATGGTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCA
TCGAGCCATTACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGA
TCATTAATTAGTATGGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATA
AAACTCCCTCCTCTGATGCACAGGATAAGCAGTTTGGTACTTGGAGACTGAGAGTCACACCTGTCGATTA
CCTTCTGGGAGTGGCTGACTTAACTGGAGAATTGATGCGGATGTGTATTAACAGTGTGGGGAATGGGGAC
ATTGATACCCCCTTTGAAGTGAGCCAGTTTTTACGTCAGGTTTATGATGGGTTTTCATTCATTGGCAACA
CTGGACCTTACGAGGTTTCTAAGAAGCTGTATACCTTGAAACAAAGTTTGGCCAAAGTGGAGAATGCTTG
TTATGCCTTGAAAGTCAGAGGGTCAGAAATTCCAAAACATATGTTGGCAGATGTGTTTTCAGTTAAAACA
GAAATGATAGATCAAGAAGAGGGCATTTCTTAG

Translation (290 aa):
MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRT
IFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTR
SLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGD
IDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKT
EMIDQEEGIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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