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Report for CCDS4348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4348.1 Public Homo sapiens 5 TTC1 24 110 108 CCDS HistoryNCBI Gene:7265Re-query CCDS DB by CCDS ID:4348.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4348.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231238.10 ENSP00000231238.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231238.10Link to Ensembl Protein Viewer:ENSP00000231238.4Re-query CCDS DB by Nucleotide ID:ENST00000231238Re-query CCDS DB by Protein ID:ENSP00000231238
Original member Current member EBI ENST00000522793.5 ENSP00000429225.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522793.5Link to Ensembl Protein Viewer:ENSP00000429225.1Re-query CCDS DB by Nucleotide ID:ENST00000522793Re-query CCDS DB by Protein ID:ENSP00000429225
Original member Current member EBI ENST00000682719.1 ENSP00000507891.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682719.1Link to Ensembl Protein Viewer:ENSP00000507891.1Re-query CCDS DB by Nucleotide ID:ENST00000682719Re-query CCDS DB by Protein ID:ENSP00000507891
Original member Current member NCBI NM_001282500.2 NP_001269429.1 Accepted alive Link to Nucleotide Sequence:NM_001282500.2Link to Protein Sequence:NP_001269429.1Re-query CCDS DB by Nucleotide ID:NM_001282500Re-query CCDS DB by Protein ID:NP_001269429Link to BLAST:NP_001269429.1
Original member Current member NCBI NM_003314.3 NP_003305.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003314.3Link to Protein Sequence:NP_003305.1Re-query CCDS DB by Nucleotide ID:NM_003314Re-query CCDS DB by Protein ID:NP_003305Link to BLAST:NP_003305.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269429.1 292 Q99614 292 100% 0 0
NP_003305.1 292 Q99614 292 100% 0 0

Chromosomal Locations for CCDS 4348.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 160010529 160010858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160035140 160035200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160036691 160036803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160043133 160043169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160049514 160049662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160051129 160051183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160064932 160065065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGGGGAGAAGTCAGAGAACTGTGGGGTTCCAGAGGATCTGTTAAATGGTTTGAAGGTTACAGATACTC
AGGAAGCCGAGTGTGCTGGCCCTCCAGTTCCTGATCCCAAAAATCAGCATTCCCAGAGTAAGCTGCTCAG
GGATGATGAGGCCCATCTCCAGGAGGACCAGGGAGAAGAGGAGTGTTTTCATGACTGCAGTGCCTCATTT
GAGGAGGAGCCAGGAGCGGACAAGGTTGAGAACAAATCTAATGAAGATGTGAATTCCTCTGAACTAGATG
AAGAATACCTAATAGAACTGGAAAAAAACATGTCGGATGAAGAGAAACAGAAAAGAAGAGAAGAGAGCAC
TAGACTAAAGGAGGAGGGAAATGAACAGTTTAAGAAAGGAGATTATATAGAAGCTGAAAGTTCTTATAGT
CGAGCCCTCGAAATGTGCCCATCCTGCTTCCAAAAGGAGAGGTCGATTCTATTTTCAAATAGAGCTGCAG
CAAGGATGAAACAGGACAAGAAAGAAATGGCCATCAATGACTGCAGCAAAGCAATTCAATTAAACCCCAG
CTATATCAGGGCAATATTGAGGAGAGCAGAGTTGTATGAGAAGACGGACAAGCTAGATGAAGCCCTGGAA
GACTATAAATCTATATTAGAAAAAGATCCATCAATACATCAAGCAAGAGAAGCTTGTATGAGATTACCTA
AGCAAATTGAAGAACGTAATGAAAGACTAAAAGAAGAGATGTTAGGTAAATTAAAAGATCTTGGGAACTT
GGTTCTCCGACCTTTTGGGCTCTCCACGGAAAATTTCCAGATCAAACAGGATTCCTCTACCGGCTCGTAC
TCCATCAATTTCGTTCAAAATCCAAATAATAACAGATAA

Translation (292 aa):
MGEKSENCGVPEDLLNGLKVTDTQEAECAGPPVPDPKNQHSQSKLLRDDEAHLQEDQGEEECFHDCSASF
EEEPGADKVENKSNEDVNSSELDEEYLIELEKNMSDEEKQKRREESTRLKEEGNEQFKKGDYIEAESSYS
RALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALE
DYKSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSY
SINFVQNPNNNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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