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Report for CCDS19006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19006.1 Public Mus musculus 4 Lrrc47 23 108 98 CCDS HistoryNCBI Gene:72946Re-query CCDS DB by CCDS ID:19006.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19006.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030894.14 ENSMUSP00000030894.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030894.14Link to Ensembl Protein Viewer:ENSMUSP00000030894.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030894Re-query CCDS DB by Protein ID:ENSMUSP00000030894
Original member Current member NCBI NM_201226.1 NP_957678.1 Accepted alive Link to Nucleotide Sequence:NM_201226.1Link to Protein Sequence:NP_957678.1Re-query CCDS DB by Nucleotide ID:NM_201226Re-query CCDS DB by Protein ID:NP_957678Link to BLAST:NP_957678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_957678.1 581 Q505F5 581 100% 0 0

Chromosomal Locations for CCDS 19006.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154011816 154012436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154015656 154016108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154017418 154017534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154018370 154018485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154018930 154019032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154019394 154019483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154019631 154019876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGCGGCGGCGGCGATGGCCGTGTCCGAGGCCTGGCCGGAGCTGGAGCTGGCCGAGCGCGAGCGGCGGC
GCGAGCTGCTGCTGACCGGGCCCGGGCTGGAGGAGCGGGTGAAGGCGGCGGGCGGGCGGCTTCCGCCGCG
GCTCTTCACGCTGCCGCTGCTGCACTACCTGGAGGTGAGCGGCTGCGGCAGCCTGCGCGCGCCGGGGCCC
GGCCTCGCGCAGGGCCTCCCGCAGCTGCACAGCCTGGTGCTGCGGCGCAACGCGCTGGGGCCGGGCCTGA
GCCCCGAGCTGGGGCCGCTGCCCGCGCTGCGCGTCCTCGACCTGTCCGGCAACGCGTTGGAGACGCTGCC
GCCCGGCGAGGGCCTGGGCCCCGCCGAGCCCCCCGGACTACCGCAGCTGCAGAGCCTCAACCTCAGCGGC
AACCGCCTGCGCGAGCTGCCCGCCGACCTGGCGCGCTGCGCCCCTCGCCTGCAGAGCCTCAATCTCACCG
GCAACCGCCTGGACGCCTTTCCCCCCGAGCTCTTCCGGCCAGGAGCTCTGCCCCTGCTCAGTGAGCTGGC
AGCTGCCGACAACTGCCTGCGGGAGCTCAGCCCAGACATCGCGCATCTTGCCTCGCTCAAGACATTGGAC
CTCTCCAACAACCAACTAACAGAGATCCCTGCTGAGCTGGCAGACTGCCCCAAGCTCAAAGAGATCAACT
TTCGAGGAAACAGGCTTCGAGACAAGCGCCTGGAGAAGATGGTGGGTGGCTGCCAGACCAAGTCCATCCT
AGAGTACCTTCGTGCTGGTGGCCGCGGCGGCCGGAGCAAGGGCCGGCAAGAGGCCTCTGAGAAGGAGGAC
AGAAAGAAGAGACGGGAGCGGAAGCAGCATCGGGAAAGCGGGGAGGGCGAGGAGGAGGTAGCAGACTCAG
CCAGGCTGATGCTCAAGGTCTTGCATGTCTCTGAGAACCCCACACCCCTGACAGTCAGGGTGAGCCCGGA
GGTCAAGGATGTGCGCCCATACATCGTCGGGGCCATTGTGAGAGGCATGGACCTGCAGCCAGGAAATGCA
CTCCGTCGCTTTCTCAACTCCCAGACGAAGCTCCACGACGACCTCTGCGAGAAGAGGACAGCAGCGACCA
TCGCGACCCATGACCTCCAGGCTGTGCGTGGACCCCTGCTGTATGCAGCCCGGCCGCCCGAGGACCTCAA
GATTGTGCCTTTGGGACGGAAAGAGGCCAAGGCCAAGGAGCTCGTGCGGCAGCTGCAGCTGGAGGCCGAG
GAACAGAGAAAGCAGAAGAAGAGGCAGAGCGTCTCAGGGCTGCACAGGTACCTTCACCTCCTGGATGGGA
AGGAGAACTACCCCTGTCTTGTGGATGCCGAGGGAGACGTGATTTCTTTCCCTCCTATAACAAACAGTGA
GAAGACAAAGATTAAGAAAACCACCTGCAACTTGTTCTTGGAAGTAACGAGTGCCACTAGCCTGCAGCTC
TGTAAGGACATCATGGACAGCCTTATCCTGAGAATGGCAGAACTGAGCAAAAGCACTTCAGAAAATAAAG
AGGAAGACATGCTCTCAGGGACGGAAGCTGATGCCGGCTGTGGGCTTTCTGATCCCAACTTGACTCTGAG
CTCTGGGAAGGATGGACAGTGCCCTCTGGTGGTGGAGCAGGTCCGAGTGGTGGACCTGGAAGGGAGCTTG
AAGGTGGTGTACCCATCCAAGACGGACCTGATCACCCTCCCTCCCCACGTGACTGTGGTCCGCTGA

Translation (581 aa):
MAAAAMAVSEAWPELELAERERRRELLLTGPGLEERVKAAGGRLPPRLFTLPLLHYLEVSGCGSLRAPGP
GLAQGLPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALETLPPGEGLGPAEPPGLPQLQSLNLSG
NRLRELPADLARCAPRLQSLNLTGNRLDAFPPELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLD
LSNNQLTEIPAELADCPKLKEINFRGNRLRDKRLEKMVGGCQTKSILEYLRAGGRGGRSKGRQEASEKED
RKKRRERKQHRESGEGEEEVADSARLMLKVLHVSENPTPLTVRVSPEVKDVRPYIVGAIVRGMDLQPGNA
LRRFLNSQTKLHDDLCEKRTAATIATHDLQAVRGPLLYAARPPEDLKIVPLGRKEAKAKELVRQLQLEAE
EQRKQKKRQSVSGLHRYLHLLDGKENYPCLVDAEGDVISFPPITNSEKTKIKKTTCNLFLEVTSATSLQL
CKDIMDSLILRMAELSKSTSENKEEDMLSGTEADAGCGLSDPNLTLSSGKDGQCPLVVEQVRVVDLEGSL
KVVYPSKTDLITLPPHVTVVR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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