NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21028.1 Public Mus musculus 7 Ttc9b 23 108 98 CCDS HistoryNCBI Gene:73032Re-query CCDS DB by CCDS ID:21028.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008088.8 ENSMUSP00000008088.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008088.8Link to Ensembl Protein Viewer:ENSMUSP00000008088.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000008088Re-query CCDS DB by Protein ID:ENSMUSP00000008088
Original member Current member NCBI NM_028417.1 NP_082693.1 Accepted alive Link to Nucleotide Sequence:NM_028417.1Link to Protein Sequence:NP_082693.1Re-query CCDS DB by Nucleotide ID:NM_028417Re-query CCDS DB by Protein ID:NP_082693Link to BLAST:NP_082693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082693.1 239 Q9D6E4 239 100% 0 0

Chromosomal Locations for CCDS 21028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27653927 27654347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27654912 27655094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27655911 27656026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGCAGCGCGGCGCGCTGTCCCCGGTGCTGATGCTCAGCGCTGCCCCGGAGCCTCCACCGCGCCCGCCTC
CCGCCCTTTCCCCGCCGGGCCCCGGCTCAGCGCCTCGCCATGGCTCTGCTCGGTCGGGTCCTGCCCCAGA
GCCGTCTGGGGGCCTGGCTGCGGCGCTCGACAGCAGCCTGCGGGCTGCCGTGGCGTTCAAGGCGGAGGGT
CAGCGTTGCTACCGAGAGAAGAAGTTCCGAGAAGCCATTGGCAAGTACCACCGGGCACTGCTGCAGCTGA
AGGCGGCTCAAGGGGCCCGCCCTGGCGGTCTGCCCACCCCCTCCCCGGGACCCACCACCAGCCCGGGGCC
CGCCCGCCTCAGCGAGGAGCAGCGGCGCCTGGTGGAGAACACAGAGGTTGAATGTTACGACTCCCTCACT
GCTTGCCTCCTGCAGTCGGAGCTGGTGAACTATGAGCGGGTGCGTGAGTACTGTCTCAAGGTGCTGGAGA
AACAGCAGGGCAACTTCAAGGCCACCTATCGTGCCGGCATTGCCTTCTACCACTTGGGTGATTATGCACG
TGCGCTGCGCTACCTACAGGAGGCCCGCAGCCGAGAGCCCACAGACACCAATGTTCTCCGCTACATCCAG
CTGACTCAGCTGAAGATGAACCGTTGCAGCCTCCAGAGGGAAGACAGTGATGGTGGCACTGGAGGCCCAG
CTCGGAATGTCGTGGGCTGA

Translation (239 aa):
MQRGALSPVLMLSAAPEPPPRPPPALSPPGPGSAPRHGSARSGPAPEPSGGLAAALDSSLRAAVAFKAEG
QRCYREKKFREAIGKYHRALLQLKAAQGARPGGLPTPSPGPTTSPGPARLSEEQRRLVENTEVECYDSLT
ACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIAFYHLGDYARALRYLQEARSREPTDTNVLRYIQ
LTQLKMNRCSLQREDSDGGTGGPARNVVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH