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Report for CCDS36495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36495.1 Public Mus musculus 12 Prox2 23 108 98 CCDS HistoryNCBI Gene:73422Re-query CCDS DB by CCDS ID:36495.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110249.2 ENSMUSP00000105878.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110249.2Link to Ensembl Protein Viewer:ENSMUSP00000105878.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110249Re-query CCDS DB by Protein ID:ENSMUSP00000105878
Original member Current member EBI ENSMUST00000177289.8 ENSMUSP00000135881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177289.8Link to Ensembl Protein Viewer:ENSMUSP00000135881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177289Re-query CCDS DB by Protein ID:ENSMUSP00000135881
Original member Current member NCBI NM_001361238.1 NP_001348167.1 Accepted alive Link to Nucleotide Sequence:NM_001361238.1Link to Protein Sequence:NP_001348167.1Re-query CCDS DB by Nucleotide ID:NM_001361238Re-query CCDS DB by Protein ID:NP_001348167Link to BLAST:NP_001348167.1
Original member NCBI NM_001361239.1 NP_001348168.1 Updated not alive Link to Nucleotide Sequence:NM_001361239.1Link to Protein Sequence:NP_001348168.1Re-query CCDS DB by Nucleotide ID:NM_001361239Re-query CCDS DB by Protein ID:NP_001348168
Current member NCBI NM_001361239.2 NP_001348168.1 Accepted alive Link to Nucleotide Sequence:NM_001361239.2Link to Protein Sequence:NP_001348168.1Re-query CCDS DB by Nucleotide ID:NM_001361239Re-query CCDS DB by Protein ID:NP_001348168Link to BLAST:NP_001348168.1
Original member NCBI NM_175198.5 NP_780407.1 Updated not alive Link to Nucleotide Sequence:NM_175198.5Link to Protein Sequence:NP_780407.1Re-query CCDS DB by Nucleotide ID:NM_175198Re-query CCDS DB by Protein ID:NP_780407
Current member NCBI NM_175198.6 NP_780407.1 Accepted alive Link to Nucleotide Sequence:NM_175198.6Link to Protein Sequence:NP_780407.1Re-query CCDS DB by Nucleotide ID:NM_175198Re-query CCDS DB by Protein ID:NP_780407Link to BLAST:NP_780407.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348167.1 593 Q8BII1 593 100% 0 0
NP_001348168.1 593 Q8BII1 593 100% 0 0
NP_780407.1 593 Q8BII1 593 100% 0 0

Chromosomal Locations for CCDS 36495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 85087369 85087554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85087910 85088104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85089641 85089748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85094135 85095427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGATCCACCTGCTGCTGTCTTGCTTCCTCCTCAGTCTCGGACCTGCACCCACCTGGCAGAAGAAACCT
GCATGGACCAGGAGAGAAGCCCAGCCACCGCAGAGGCAGGCAGAGACTCGTTTCCCAGTGGTCAGCTGCC
CAGCTCCAGCCTCACTGAAGCTGACTGGTTTTGGGACGAGCACATCCAGGCTAAGAGGGCCAGAGTAGAG
ACCATTGTCCGAGGCATGTGTCTCTCTCCTAGCTCGTCGGTGTCAGGCAGAGCCAGGGAGAGCTTGCGCT
GTCCAGAAAAGGGTCGGGAGCGGAAGAGAAAGCAGAGCCTTCCCATGCACCAAGGTCCCCTGAAATCTAG
CCCTGCCTGGGAGCGAGGGCCCAAGAAGGGGGGGACCCGGGTGAAAGAACAGCTTCATCTACTGAAGCAA
CAGCTAAGACATTTGCAGGAGCATGTCCTACAGGCCACAGAGCCCAGAGCACCAGCACAGAGCCCAGGAG
GAACTGAGCCAAGAAGCTCCCCGAGGGCAAGGCCGAGGAACAGCTGCTCATCTGGTGCCTGGACCGTGGA
GAACGAGCCTCACCAGAGTTCTAGCAAGGACCTCTGTGGAGCAGTAAAGCCCGGAGCAGCTGAGGTCCTA
CAGTACTCAGAGGAGCCGATGCTCTGTCCTTCTGGCCCACGGGCCTTGGTGGAGACTCTGAGGAAAGAAC
TGAGCAGGGCCGTGTCCCAAGCTGTGGACTCCGTATTACAGCAAGTGCTATTTGATCCACAGAGACATCT
CACGCAGCAGGAGCGAAGCTGCCAGGGGCTAGCATCAGAGGGCAGAAACCAGCCTTCACCTCCAGGGAGA
AGTGCCTATAAGGACCCACTTGCTCTTGCCACCCTGCCCAGAAAGATCCAGCCACAAGCTGGGGTTCCCT
TGGGCAATTCAACACTGGCAAGGCCTCTAGATTCTCCTATGTGTCCTGTCTCTCCAAGAGGAGTCCCTAG
ATCATATCAGAGTCCCCTACCAAATTGTCCCTTGACAAATGTACCTTCCCACACCTGGGAAAATCAGATG
CTTAGGCAGCTTCTGGGTCGTGGGCCCGATGGCCAATGGAGTGGCAGCCCTCCCCAGGACGCAGCTTTCC
AAAGTCATACCTCCCCAGAGTCTGCCCAGCAACCGTGGGGGCTGAGCCAGCAGCAGCTCCCCCTGTCTCT
CACCCCGGTCCATCTGGAAAGCCGGCCCCTCCCACCGCCTGTGAAGATGGAGCAGGGCGTGCTGCGGGGC
GTGGCTGACTCACTTCCTTTTTCTTCCATCCACATCCAGGAAGGCCTGAGCCCTGGTCACCTGAAGAAGG
CCAAACTAATGTTTTTCTTCACGCGGTACCCCAGCTCCAGCCTCCTGAAAGCTTATTTCCCTGATGTTCA
GTTCAACCGCTGCATCACCTCCCAGATGATCAAGTGGTTCAGCAACTTCCGTGAATTTTATTACATCCAG
ATGGAAAAGTATGCCCGGCAAGCACTTTCAGACGGTATCACGAACGCCCAAGCACTGGCTGTCCTCCGAG
ACTCGGAGCTTTTCCGAGTTCTCAATACACACTATAACAAGGGGAATGACTTTGAGGTCCCAGACTGCTT
CTTGGAGATTGCCGCCCTGACACTGAAGGAGTTCTTCAGGGCTGTCTTGGCAGGGAAAGATTCAGATCCT
TCCTGGAAGAAACCCATTTACAAGGTTATCTCAAAACTCGACAGTGACGTCCCAGAGATGCTCAAATCAC
CCAGCTTCCTCCCGGGACTGTTCCCGAGTTAA

Translation (593 aa):
MDPPAAVLLPPQSRTCTHLAEETCMDQERSPATAEAGRDSFPSGQLPSSSLTEADWFWDEHIQAKRARVE
TIVRGMCLSPSSSVSGRARESLRCPEKGRERKRKQSLPMHQGPLKSSPAWERGPKKGGTRVKEQLHLLKQ
QLRHLQEHVLQATEPRAPAQSPGGTEPRSSPRARPRNSCSSGAWTVENEPHQSSSKDLCGAVKPGAAEVL
QYSEEPMLCPSGPRALVETLRKELSRAVSQAVDSVLQQVLFDPQRHLTQQERSCQGLASEGRNQPSPPGR
SAYKDPLALATLPRKIQPQAGVPLGNSTLARPLDSPMCPVSPRGVPRSYQSPLPNCPLTNVPSHTWENQM
LRQLLGRGPDGQWSGSPPQDAAFQSHTSPESAQQPWGLSQQQLPLSLTPVHLESRPLPPPVKMEQGVLRG
VADSLPFSSIHIQEGLSPGHLKKAKLMFFFTRYPSSSLLKAYFPDVQFNRCITSQMIKWFSNFREFYYIQ
MEKYARQALSDGITNAQALAVLRDSELFRVLNTHYNKGNDFEVPDCFLEIAALTLKEFFRAVLAGKDSDP
SWKKPIYKVISKLDSDVPEMLKSPSFLPGLFPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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