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Report for CCDS50968.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50968.2 Public Mus musculus 3 Cfap141 23 108 98 CCDS HistoryNCBI Gene:73545Re-query CCDS DB by CCDS ID:50968.2See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50968.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238911.1 ENSMUSP00000158884.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238911.1Link to Ensembl Protein Viewer:ENSMUSP00000158884.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238911Re-query CCDS DB by Protein ID:ENSMUSP00000158884
Original member Current member NCBI NM_028567.2 NP_082843.2 Accepted alive Link to Nucleotide Sequence:NM_028567.2Link to Protein Sequence:NP_082843.2Re-query CCDS DB by Nucleotide ID:NM_028567Re-query CCDS DB by Protein ID:NP_082843Link to BLAST:NP_082843.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082843.2 101 Q9D9D9 101 100% 0 0

Chromosomal Locations for CCDS 50968.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90062851 90062883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90063209 90063249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90064425 90064554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90065510 90065611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGTCTGCAGAAAAAATGACAAAACTAGAAGAGAATTTGCAAAGAGCTGTGGCACTTAAGAAGACTGTCG
ACAGGTGGCGGAATTTTCATATTCACTGTATGTGGCAGACAACATTGGACCAACGGAGAAACCTATTTGC
TGCCCTAAGGATGAAGGATACTAAGGAACAGGAATTAGCACTGTCTAACAAACAGCTACTAGTGGTCCGT
CAAGCTGCCTTACACGAGCTGTTTGAAAAGGAGTATCAGCAGTACCAGCAGGAACTCAATCAGATGGGCA
AAGCTTTTTATGAGGAAAGACTCTGA

Translation (101 aa):
MSAEKMTKLEENLQRAVALKKTVDRWRNFHIHCMWQTTLDQRRNLFAALRMKDTKEQELALSNKQLLVVR
QAALHELFEKEYQQYQQELNQMGKAFYEERL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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