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Report for CCDS17463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17463.1 Public Mus musculus 3 Hapln2 23 108 98 CCDS HistoryNCBI Gene:73940Re-query CCDS DB by CCDS ID:17463.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005014.8 ENSMUSP00000005014.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005014.8Link to Ensembl Protein Viewer:ENSMUSP00000005014.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000005014Re-query CCDS DB by Protein ID:ENSMUSP00000005014
Original member Current member NCBI NM_022031.2 NP_071314.1 Accepted alive Link to Nucleotide Sequence:NM_022031.2Link to Protein Sequence:NP_071314.1Re-query CCDS DB by Nucleotide ID:NM_022031Re-query CCDS DB by Protein ID:NP_071314Link to BLAST:NP_071314.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071314.1 341 Q9ESM3 341 100% 0 0

Chromosomal Locations for CCDS 17463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88022542 88022825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88023221 88023403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88023524 88023640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88023765 88024118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88024330 88024417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGCCAAGCAGGATCCCTCTCCCTGCGTTCTGCTGCTTCCTTCTCCCCTGGGCCTTCACCAGCTTTCACA
AAGCCCTGGGGAATCCGGCCCCCCATCCGGGTCCCCACTACCTCCTGCCCCCCATCCACGAGGTCATTCA
CTCTCGTCGTGGGGCCACGGCCACACTGCCCTGCGTCCTGGGCACCTCGCCTCCCAGCTACAAAGTACGC
TGGAGCAAAGTGGAGCCCGGTGAGCTGCGGGAAACGCTAATCCTCATTACCAACGGACTGCACGCCCGGG
ACTACGGGCTCCTGGGAGGGCGCGCCAGCTTGCGGAGAGGGCATCGGCTGGACGCCTCCCTGATCATCAA
GAACGTGCGTCTGGAGGATGAGGGTCGGTACCGCTGCGAGCTCATCAATGGCATTGAGGACGAGAGCGTG
GCACTGACCCTGCGCCTGGAGGGTGTGGTGTTTCCGTACCAACCCAGCCGAGGCCGCTACCAGTTCAATT
ACTTCGAAGCGAAGCGGGCGTGTGAAGAGCAGGACGGACGCCTGGCCACTTACGGCCAACTCTACCAGGC
GTGGACCGAGGGGCTGGACTGGTGCAACGCCGGCTGGTTGCTCGAGGGCTCCGTGCGTTACCCTGTGCTC
ACCGCGCGGGCTCCGTGCGGCGGCCACGGGCGGCCAGGCATCCGCAGCTACGGGCCCCGCGACCGCAGCC
GCGACCGCTATGACGCCTTCTGCTTCACCTCGGCCCTGGCAGGCCAGGTGTTCTTCGTGCCGGGGCGGCT
GACGCTGTCAGAAGCCCACGCGGCTTGCCGGAGGCGCGGAGCCGTAGTAGCCAAGGTCGGGCACCTCTAC
GCCGCCTGGAAGTTCTCCGGCCTGGATCAATGCGACGGAGGCTGGCTGGCGGACGGCAGCGTTCGCTTCC
CCATCACGACGCCGCGGCCGCGCTGTGGGGGTCTCCCTGACCCAGGGGTGCGCAGCTTCGGCTTCCCCCG
ACCCCAGCAGGCGTCCTACGGGACCTACTGCTATGCCGAGAAGTAG

Translation (341 aa):
MPSRIPLPAFCCFLLPWAFTSFHKALGNPAPHPGPHYLLPPIHEVIHSRRGATATLPCVLGTSPPSYKVR
WSKVEPGELRETLILITNGLHARDYGLLGGRASLRRGHRLDASLIIKNVRLEDEGRYRCELINGIEDESV
ALTLRLEGVVFPYQPSRGRYQFNYFEAKRACEEQDGRLATYGQLYQAWTEGLDWCNAGWLLEGSVRYPVL
TARAPCGGHGRPGIRSYGPRDRSRDRYDAFCFTSALAGQVFFVPGRLTLSEAHAACRRRGAVVAKVGHLY
AAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSFGFPRPQQASYGTYCYAEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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