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Report for CCDS9894.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9894.2 Public Homo sapiens 14 GPR68 24 110 108 CCDS HistoryNCBI Gene:8111Re-query CCDS DB by CCDS ID:9894.2Re-query CCDS DB by GeneID:8111See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 9894.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available conservation and protein data. The previously represented start codon is overlapped by an upstream ORF, which is predicted to prevent its use, but would allow the use of the updated start codon.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 9894.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000531499.2 ENSP00000434045.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531499.2Link to Ensembl Protein Viewer:ENSP00000434045.2Re-query CCDS DB by Nucleotide ID:ENST00000531499Re-query CCDS DB by Protein ID:ENSP00000434045
Original member Current member EBI ENST00000535815.5 ENSP00000440797.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535815.5Link to Ensembl Protein Viewer:ENSP00000440797.1Re-query CCDS DB by Nucleotide ID:ENST00000535815Re-query CCDS DB by Protein ID:ENSP00000440797
Original member Current member EBI ENST00000650645.1 ENSP00000498702.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000650645.1Link to Ensembl Protein Viewer:ENSP00000498702.1Re-query CCDS DB by Nucleotide ID:ENST00000650645Re-query CCDS DB by Protein ID:ENSP00000498702
Original member Current member NCBI NM_001177676.2 NP_001171147.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001177676.2Link to Protein Sequence:NP_001171147.1Re-query CCDS DB by Nucleotide ID:NM_001177676Re-query CCDS DB by Protein ID:NP_001171147Link to BLAST:NP_001171147.1
Original member Current member NCBI NM_001348437.1 NP_001335366.1 Accepted alive Link to Nucleotide Sequence:NM_001348437.1Link to Protein Sequence:NP_001335366.1Re-query CCDS DB by Nucleotide ID:NM_001348437Re-query CCDS DB by Protein ID:NP_001335366Link to BLAST:NP_001335366.1
Original member Current member NCBI NM_003485.3 NP_003476.3 Accepted alive Link to Nucleotide Sequence:NM_003485.3Link to Protein Sequence:NP_003476.3Re-query CCDS DB by Nucleotide ID:NM_003485Re-query CCDS DB by Protein ID:NP_003476Link to BLAST:NP_003476.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171147.1 365 Q15743 365 100% 0 0
NP_001335366.1 365 Q15743 365 100% 0 0
NP_003476.3 365 Q15743 365 100% 0 0

Chromosomal Locations for CCDS 9894.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 91233953 91235050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGGGAACATCACTGCAGACAACTCCTCGATGAGCTGTACCATCGACCATACCATCCACCAGACGCTGG
CCCCGGTGGTCTATGTTACCGTGCTGGTGGTGGGCTTCCCGGCCAACTGCCTGTCCCTCTACTTCGGCTA
CCTGCAGATCAAGGCCCGGAACGAGCTGGGCGTGTACCTGTGCAACCTGACGGTGGCCGACCTCTTCTAC
ATCTGCTCGCTGCCCTTCTGGCTGCAGTACGTGCTGCAGCACGACAACTGGTCTCACGGCGACCTGTCCT
GCCAGGTGTGCGGCATCCTCCTGTACGAGAACATCTACATCAGCGTGGGCTTCCTCTGCTGCATCTCCGT
GGACCGCTACCTGGCTGTGGCCCATCCCTTCCGCTTCCACCAGTTCCGGACCCTGAAGGCGGCCGTCGGC
GTCAGCGTGGTCATCTGGGCCAAGGAGCTGCTGACCAGCATCTACTTCCTGATGCACGAGGAGGTCATCG
AGGACGAGAACCAGCACCGCGTGTGCTTTGAGCACTACCCCATCCAGGCATGGCAGCGCGCCATCAACTA
CTACCGCTTCCTGGTGGGCTTCCTCTTCCCCATCTGCCTGCTGCTGGCGTCCTACCAGGGCATCCTGCGC
GCCGTGCGCCGGAGCCACGGCACCCAGAAGAGCCGCAAGGACCAGATCCAGCGGCTGGTGCTCAGCACCG
TGGTCATCTTCCTGGCCTGCTTCCTGCCCTACCACGTGTTGCTGCTGGTGCGCAGCGTCTGGGAGGCCAG
CTGCGACTTCGCCAAGGGCGTTTTCAACGCCTACCACTTCTCCCTCCTGCTCACCAGCTTCAACTGCGTC
GCCGACCCCGTGCTCTACTGCTTCGTCAGCGAGACCACCCACCGGGACCTGGCCCGCCTCCGCGGGGCCT
GCCTGGCCTTCCTCACCTGCTCCAGGACCGGCCGGGCCAGGGAGGCCTACCCGCTGGGTGCCCCCGAGGC
CTCCGGGAAAAGCGGGGCCCAGGGTGAGGAGCCCGAGCTGTTGACCAAGCTCCACCCGGCCTTCCAGACC
CCTAACTCGCCAGGGTCGGGCGGGTTCCCCACGGGCAGGTTGGCCTAG

Translation (365 aa):
MGNITADNSSMSCTIDHTIHQTLAPVVYVTVLVVGFPANCLSLYFGYLQIKARNELGVYLCNLTVADLFY
ICSLPFWLQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPFRFHQFRTLKAAVG
VSVVIWAKELLTSIYFLMHEEVIEDENQHRVCFEHYPIQAWQRAINYYRFLVGFLFPICLLLASYQGILR
AVRRSHGTQKSRKDQIQRLVLSTVVIFLACFLPYHVLLLVRSVWEASCDFAKGVFNAYHFSLLLTSFNCV
ADPVLYCFVSETTHRDLARLRGACLAFLTCSRTGRAREAYPLGAPEASGKSGAQGEEPELLTKLHPAFQT
PNSPGSGGFPTGRLA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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