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Report for CCDS5566.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5566.2 Public Homo sapiens 7 LAT2 24 110 108 CCDS HistoryNCBI Gene:7462Re-query CCDS DB by CCDS ID:5566.2See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 5566.2
The coding region has been updated to represent an alternate splice pattern, resulting in an alternate and longer C-terminus that is better supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5566.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275635.11 ENSP00000275635.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000275635.11Link to Ensembl Protein Viewer:ENSP00000275635.7Re-query CCDS DB by Nucleotide ID:ENST00000275635Re-query CCDS DB by Protein ID:ENSP00000275635
Original member Current member EBI ENST00000344995.9 ENSP00000344881.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344995.9Link to Ensembl Protein Viewer:ENSP00000344881.5Re-query CCDS DB by Nucleotide ID:ENST00000344995Re-query CCDS DB by Protein ID:ENSP00000344881
Original member Current member EBI ENST00000398475.5 ENSP00000381492.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398475.5Link to Ensembl Protein Viewer:ENSP00000381492.1Re-query CCDS DB by Nucleotide ID:ENST00000398475Re-query CCDS DB by Protein ID:ENSP00000381492
Original member Current member EBI ENST00000460943.6 ENSP00000420494.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000460943.6Link to Ensembl Protein Viewer:ENSP00000420494.1Re-query CCDS DB by Nucleotide ID:ENST00000460943Re-query CCDS DB by Protein ID:ENSP00000420494
Original member Current member NCBI NM_014146.4 NP_054865.2 Accepted alive Link to Nucleotide Sequence:NM_014146.4Link to Protein Sequence:NP_054865.2Re-query CCDS DB by Nucleotide ID:NM_014146Re-query CCDS DB by Protein ID:NP_054865Link to BLAST:NP_054865.2
Original member Current member NCBI NM_032463.3 NP_115852.1 Accepted alive Link to Nucleotide Sequence:NM_032463.3Link to Protein Sequence:NP_115852.1Re-query CCDS DB by Nucleotide ID:NM_032463Re-query CCDS DB by Protein ID:NP_115852Link to BLAST:NP_115852.1
Original member Current member NCBI NM_032464.3 NP_115853.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032464.3Link to Protein Sequence:NP_115853.2Re-query CCDS DB by Nucleotide ID:NM_032464Re-query CCDS DB by Protein ID:NP_115853Link to BLAST:NP_115853.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054865.2 243 Q9GZY6-1 243 100% 0 0
NP_115852.1 243 Q9GZY6-1 243 100% 0 0
NP_115853.2 243 Q9GZY6-1 243 100% 0 0

Chromosomal Locations for CCDS 5566.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 74215976 74216069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74216825 74216864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74219744 74219787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74219960 74220008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74220217 74220254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74220584 74220619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74220704 74220734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74221637 74221692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74223724 74223783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74224018 74224197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74224639 74224742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGAGCTCGGGGACTGAACTGCTGTGGCCCGGAGCAGCGCTGCTGGTGCTGTTGGGGGTGGCAGCCAGTC
TGTGTGTGCGCTGCTCACGCCCAGGTGCAAAGAGGTCAGAGAAAATCTACCAGCAGAGAAGTCTGCGTGA
GGACCAACAGAGCTTTACGGGGTCCCGGACCTACTCCTTGGTCGGGCAGGCATGGCCAGGACCCCTGGCG
GACATGGCACCCACAAGGAAGGACAAGCTGTTGCAATTCTACCCCAGCCTGGAGGATCCAGCATCTTCCA
GGTACCAGAACTTCAGCAAAGGAAGCAGACACGGGTCGGAGGAAGCCTACATAGACCCCATTGCCATGGA
GTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAAGATGATGATGCCAATTCCTACGAGAATGTGCTC
ATTTGCAAGCAGAAAACCACAGAGACAGGTGCCCAGCAGGAGGGCATAGGTGGCCTCTGCAGAGGGGACC
TCAGCCTGTCACTGGCCCTGAAGACTGGCCCCACTTCTGGTCTCTGTCCCTCTGCCTCCCCGGAAGAAGA
TGAGGAATCTGAGGATTATCAGAACTCAGCATCCATCCATCAGTGGCGCGAGTCCAGGAAGGTCATGGGG
CAACTCCAGAGAGAAGCATCCCCTGGCCCGGTGGGAAGCCCAGACGAGGAGGACGGGGAACCGGATTACG
TGAATGGGGAGGTGGCAGCCACAGAAGCCTAG

Translation (243 aa):
MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPGPLA
DMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYNWGRFSKPPEDDDANSYENVL
ICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRKVMG
QLQREASPGPVGSPDEEDGEPDYVNGEVAATEA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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