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Report for CCDS51052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51052.1 Public Mus musculus 3 Slc25a54 23 108 98 CCDS HistoryNCBI Gene:74686Re-query CCDS DB by CCDS ID:51052.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029478.4 ENSMUSP00000029478.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029478.4Link to Ensembl Protein Viewer:ENSMUSP00000029478.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029478Re-query CCDS DB by Protein ID:ENSMUSP00000029478
Original member Current member NCBI NM_029054.1 NP_083330.1 Accepted alive Link to Nucleotide Sequence:NM_029054.1Link to Protein Sequence:NP_083330.1Re-query CCDS DB by Nucleotide ID:NM_029054Re-query CCDS DB by Protein ID:NP_083330Link to BLAST:NP_083330.1

Chromosomal Locations for CCDS 51052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 109080545 109080727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109085733 109085859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109094208 109094295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109098576 109098687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109102697 109102855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109107237 109107389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109111028 109111135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109112012 109112179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109112770 109112917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109116337 109116512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGCTACGCAGGCTGCAGGACTTTCTGCTGCCCTCCGAGGCCTGCCAGAATGATTATAACCGCCTGGCCT
ATGAGGTCCTCTTTGAAGACCTGGACCACAATGGAGATGGTGTGGTGGACATCACGGAGCTCAGGGATGG
GCTGAAACACTGGAACTCCTCGTTTAGCGAAGACACGGAGAAGGAGATTTTTATGGATGCAGATTCCAAT
GCTGATTCAGGACTGGATTTTGAAGAATTTGTGCAGTACCTTCAAGACCATGAGAAGAAAATGAAATTGG
CCTTCAAGAGTCTGGACAAAAATGATGATGGCGTAATAGATGCTTCAGAAATAGTCGCTGCCGTGAGATC
ATTGGGAATCCACATTTCTCTCTCTCAGGCCAAAGACATCTTGAAAAGCATGGATTTTGACGGGTCGATG
ACAGTAGACTGGGATGAATGGAGAGATTTCTTTTTCTTCCACCCTGCAAAAAATATCACTGACATTGTTC
GTTTCTGGAAGCATTCTACTATAATTGATATAGGAGAGAGTATAAGTATTCCAGATGAATTTACAGAACA
AGAGAAGATGTCTGGAGAATGGTGGAAGCGGTTAGTAGCAGCAGGAATAGCGAGTGCGATCACACGGACA
TGCACGGCACCTTTGGAACGCTTGAAAGTCACGATGCAGGTTCAAAGTTTAAAAGTGAATAAAATGGGCT
TGGTTCACATGTTCAAGCAGATGGTAAAGGAAGGAGGCTTTTTTTCTCTTTGGCGAGGAAATGGTGTAAA
TATTTTAAAAATTGCACCAGAGACAGCAATCAAGATCGGGGCCTATGAACAGTATAAGAAACTTCTTAGT
TTTGATGGTGATCATTTAGGGGTTCTTCAAAGATTTACAGCTGGTTGCATGGCTGGTGCAACTTCCCAAA
CCTGTGTTTATCCCATGGAGGTGATAAAGACCAGGCTGAATTTAAGTAAAACTGGAGAGTATTCTGGGCT
TGTTGATTGTGTCAGGAAACTTCTGAAGAGAGAGGGTATTCAGGCCTTCAGCAAAGGTTATGTTCCCAAC
CTGCTGAGCATCATACCGTACGCAGGCTTAGATCTCACCATCTTCGAGCTTCTGAAGAATCACTGGCTAG
AACACTATGCAGGAAACTCGGTGAATCCTGGAATAGCAATTGTGCTGGGTTGTAGCACAGTGTCACACAC
TTGTGGCCAGTTAGCCAGTTTTCCACTGATTCTTGTTAGAACTCGCATGCAGGCTGTCATGCTGGAAAAG
GAAACAGTGCGCATGATGCAGCTCATTCAGGAAATATACACTAAAGAAGGGAAGAAGGGATTTTTCAGGG
GCTTCACCCCTAATGTCCTCAAGCTGCTTCCTGCAGTGGGCATTGGCAGTGTGGCTCACGAACTAGTGAA
AAGGCTTTTTGGATTAATCTAG

Translation (473 aa):
MLRRLQDFLLPSEACQNDYNRLAYEVLFEDLDHNGDGVVDITELRDGLKHWNSSFSEDTEKEIFMDADSN
ADSGLDFEEFVQYLQDHEKKMKLAFKSLDKNDDGVIDASEIVAAVRSLGIHISLSQAKDILKSMDFDGSM
TVDWDEWRDFFFFHPAKNITDIVRFWKHSTIIDIGESISIPDEFTEQEKMSGEWWKRLVAAGIASAITRT
CTAPLERLKVTMQVQSLKVNKMGLVHMFKQMVKEGGFFSLWRGNGVNILKIAPETAIKIGAYEQYKKLLS
FDGDHLGVLQRFTAGCMAGATSQTCVYPMEVIKTRLNLSKTGEYSGLVDCVRKLLKREGIQAFSKGYVPN
LLSIIPYAGLDLTIFELLKNHWLEHYAGNSVNPGIAIVLGCSTVSHTCGQLASFPLILVRTRMQAVMLEK
ETVRMMQLIQEIYTKEGKKGFFRGFTPNVLKLLPAVGIGSVAHELVKRLFGLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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