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Report for CCDS3358.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3358.3 Public Homo sapiens 4 NELFA 24 110 108 CCDS HistoryNCBI Gene:7469Re-query CCDS DB by CCDS ID:3358.3See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3358.2
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3358.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382882.9 ENSP00000372335.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382882.9Link to Ensembl Protein Viewer:ENSP00000372335.4Re-query CCDS DB by Nucleotide ID:ENST00000382882Re-query CCDS DB by Protein ID:ENSP00000372335
Original member Current member NCBI NM_005663.5 NP_005654.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005663.5Link to Protein Sequence:NP_005654.4Re-query CCDS DB by Nucleotide ID:NM_005663Re-query CCDS DB by Protein ID:NP_005654Link to BLAST:NP_005654.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005654.4 528 Q9H3P2-1 528 100% 0 0

Chromosomal Locations for CCDS 3358.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 1983319 1983503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1983596 1983695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1983848 1984113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1984808 1984919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1985776 1985864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1986114 1986183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1986272 1986402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1987918 1988007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1989708 1989869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1991544 1991715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2008750 2008959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCGTCCATGCGGGAGAGCGACACGGGCCTGTGGCTGCACAACAAGCTGGGGGCCACGGACGAGCTGT
GGGCGCCGCCCAGCATCGCGTCCCTGCTCACGGCCGCGGTCATCGACAACATCCGTCTCTGCTTCCATGG
CCTCTCGTCGGCAGTGAAGCTCAAGTTGCTACTCGGGACGCTGCACCTCCCGCGCCGCACGGTGGACGAG
ATGAAGGGCGCCCTAATGGAGATCATCCAGCTCGCCAGCCTCGACTCGGACCCCTGGGTGCTCATGGTCG
CCGACATCTTGAAGTCCTTTCCGGACACAGGCTCGCTTAACCTGGAGCTGGAGGAGCAGAATCCCAACGT
TCAGGATATTTTGGGAGAACTTAGAGAAAAGGTGGGTGAGTGTGAAGCGTCTGCCATGCTGCCACTGGAG
TGCCAGTACTTGAACAAAAACGCCCTGACGACCCTCGCGGGACCCCTCACTCCCCCGGTGAAGCATTTTC
AGTTAAAGCGGAAACCCAAGAGCGCCACGCTGCGGGCGGAGCTGCTGCAGAAGTCCACGGAGACCGCCCA
GCAGTTGAAGCGGAGCGCCGGGGTGCCCTTCCACGCCAAGGGCCGGGGGCTGCTGCGGAAGATGGACACC
ACCACCCCACTCAAAGGCATCCCGAAGCAGGCGCCCTTCAGAAGCCCCACGGCGCCCAGCGTCTTCAGCC
CCACAGGGAACCGGACCCCCATCCCGCCTTCCAGGACGCTGCTGCGGAAGGAACGAGGTGTGAAGCTGCT
GGACATCTCTGAGCTGGATATGGTTGGCGCTGGCCGAGAGGCGAAGCGGAGAAGGAAGACTCTCGATGCG
GAGGTGGTGGAGAAGCCGGCCAAGGAGGAAACGGTGGTGGAGAACGCCACCCCGGACTACGCAGCCGGCC
TGGTGTCCACGCAGAAACTTGGGTCCCTGAACAATGAGCCTGCGCTGCCCTCCACGAGCTACCTTCCCTC
CACGCCCAGCGTGGTTCCCGCCTCCTCCTACATCCCCAGCTCCGAGACGCCCCCAGCCCCATCTTCCCGG
GAAGCCAGCCGCCCACCAGAGGAGCCCAGCGCCCCGAGCCCCACGTTGCCAGCGCAGTTCAAGCAGCGGG
CGCCCATGTACAACAGCGGCCTGAGCCCTGCCACACCCACGCCTGCGGCGCCCACCTCGCCTCTGACACC
CACCACACCTCCGGCTGTCGCCCCTACCACTCAGACACCCCCGGTTGCCATGGTGGCCCCGCAGACCCAG
GCCCCTGCTCAGCAGCAGCCTAAGAAGAACCTGTCCCTCACGAGAGAGCAGATGTTCGCTGCCCAGGAGA
TGTTCAAGACGGCCAACAAAGTCACGCGGCCCGAGAAGGCCCTCATCCTGGGCTTCATGGCCGGCTCCCG
AGAGAACCCGTGCCAGGAGCAGGGGGACGTGATCCAGATCAAGCTGAGCGAGCACACGGAGGACCTGCCC
AAGGCGGACGGCCAGGGTAGCACAACCATGCTGGTGGACACAGTGTTTGAGATGAACTATGCCACGGGCC
AGTGGACGCGCTTCAAGAAGTACAAGCCCATGACCAATGTGTCCTAG

Translation (528 aa):
MASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDE
MKGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPNVQDILGELREKVGECEASAMLPLE
CQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDT
TTPLKGIPKQAPFRSPTAPSVFSPTGNRTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRKTLDA
EVVEKPAKEETVVENATPDYAAGLVSTQKLGSLNNEPALPSTSYLPSTPSVVPASSYIPSSETPPAPSSR
EASRPPEEPSAPSPTLPAQFKQRAPMYNSGLSPATPTPAAPTSPLTPTTPPAVAPTTQTPPVAMVAPQTQ
APAQQQPKKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLP
KADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTNVS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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