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Report for CCDS22907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22907.1 Public Mus musculus 9 Yipf2 23 108 98 CCDS HistoryNCBI Gene:74766Re-query CCDS DB by CCDS ID:22907.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034700.14 ENSMUSP00000034700.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034700.14Link to Ensembl Protein Viewer:ENSMUSP00000034700.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034700Re-query CCDS DB by Protein ID:ENSMUSP00000034700
Original member Current member EBI ENSMUST00000078572.8 ENSMUSP00000077649.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078572.8Link to Ensembl Protein Viewer:ENSMUSP00000077649.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000078572Re-query CCDS DB by Protein ID:ENSMUSP00000077649
Original member Current member EBI ENSMUST00000180365.8 ENSMUSP00000136463.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180365.8Link to Ensembl Protein Viewer:ENSMUSP00000136463.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180365Re-query CCDS DB by Protein ID:ENSMUSP00000136463
Original member Current member NCBI NM_001205157.1 NP_001192086.1 Accepted alive Link to Nucleotide Sequence:NM_001205157.1Link to Protein Sequence:NP_001192086.1Re-query CCDS DB by Nucleotide ID:NM_001205157Re-query CCDS DB by Protein ID:NP_001192086Link to BLAST:NP_001192086.1
Original member Current member NCBI NM_001205158.1 NP_001192087.1 Accepted alive Link to Nucleotide Sequence:NM_001205158.1Link to Protein Sequence:NP_001192087.1Re-query CCDS DB by Nucleotide ID:NM_001205158Re-query CCDS DB by Protein ID:NP_001192087Link to BLAST:NP_001192087.1
Original member Current member NCBI NM_001359298.1 NP_001346227.1 Accepted alive Link to Nucleotide Sequence:NM_001359298.1Link to Protein Sequence:NP_001346227.1Re-query CCDS DB by Nucleotide ID:NM_001359298Re-query CCDS DB by Protein ID:NP_001346227Link to BLAST:NP_001346227.1
Original member Current member NCBI NM_001359299.1 NP_001346228.1 Accepted alive Link to Nucleotide Sequence:NM_001359299.1Link to Protein Sequence:NP_001346228.1Re-query CCDS DB by Nucleotide ID:NM_001359299Re-query CCDS DB by Protein ID:NP_001346228Link to BLAST:NP_001346228.1
Original member Current member NCBI NM_138303.2 NP_612176.1 Accepted alive Link to Nucleotide Sequence:NM_138303.2Link to Protein Sequence:NP_612176.1Re-query CCDS DB by Nucleotide ID:NM_138303Re-query CCDS DB by Protein ID:NP_612176Link to BLAST:NP_612176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192086.1 312 Q99LP8 312 100% 0 0
NP_001192087.1 312 Q99LP8 312 100% 0 0
NP_001346227.1 312 Q99LP8 312 100% 0 0
NP_001346228.1 312 Q99LP8 312 100% 0 0
NP_612176.1 312 Q99LP8 312 100% 0 0

Chromosomal Locations for CCDS 22907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21589647 21589760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21589846 21590028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21590111 21590277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21590356 21590472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21591427 21591514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21591900 21591980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21592061 21592218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21592528 21592558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCAGCAGCTGACGAACTGGCCTTCCACGAGTTCGAGGAAGCCACAAATCTTCTGGCAGAGACCCCAG
ATGCAGCTACTACTAGCCAAAGTGATGAGCTGACCTCCCGAGAGCACGTGGCTGTGGTTGTGGGTTCAGG
CATTGGCTATGGAGCTGAAGTAGGGGAGGAAGAGGATGACAAGACATCACTTCTACAGGAAGAAAAACCA
CAGCCCAGATTCTGGACATTTGACTACTATCAGAGCTTTTTTGATGTGGATACCTCCCAGGTCTTGGACA
GGATCAAAGGCTCCCTGCTGCCCCATCCTGGCCACAACTTTGTGCGGCACCATCTTAGAAACCGTCCCGA
CCTATATGGCCCCTTCTGGATCTGTGCTACCCTGGCCTTTGTCCTGGCAGTTACTGGCAATCTCACTTTG
GTGCTTGCACAGAGACGGGACCCCTCCATTCACTACAGCCCCCAGTTCCACAAGGTGACCATAGCAGGCA
TCACCATCTACTGCTATGCGTGGCTAGTGCCGCTGGCGCTGTGGGGCTTCCTGCGGTGGCGTCAGGGCAC
GAGGGAGCGCATGGGGCTGTACACCTTCCTGGAGACAGTCTGTGTCTACGGCTACTCACTCTTTGTCTTC
ATCCCTACTGTGGTCCTGTGGCTTATCCCAGTGCAGTGGATACAGTGGCTCTTTGGAGCCCTGGGCCTGG
CCTTGTCAGCAGCCGGGCTGGTATTCACACTGTGGCCTGTTGTCCGAGAGGATACACGGCTGGTGGCTGC
GGCACTATTGTCTACTGTGGTGCTGCTTCACGCCCTCTTGGCGCTAGGCTGTAAGCTGTACTTCTTCCAG
CCACTGCCTCTGGACCATGTGGTGCCAGCACCCCAAGCTACACCTCCATCTCCCAATGTCCTGCTGCCCA
GTTCAATCCAGCCCATGACAACCTCCTAG

Translation (312 aa):
MAAADELAFHEFEEATNLLAETPDAATTSQSDELTSREHVAVVVGSGIGYGAEVGEEEDDKTSLLQEEKP
QPRFWTFDYYQSFFDVDTSQVLDRIKGSLLPHPGHNFVRHHLRNRPDLYGPFWICATLAFVLAVTGNLTL
VLAQRRDPSIHYSPQFHKVTIAGITIYCYAWLVPLALWGFLRWRQGTRERMGLYTFLETVCVYGYSLFVF
IPTVVLWLIPVQWIQWLFGALGLALSAAGLVFTLWPVVREDTRLVAAALLSTVVLLHALLALGCKLYFFQ
PLPLDHVVPAPQATPPSPNVLLPSSIQPMTTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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