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Report for CCDS44563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44563.1 Public Homo sapiens 11 CSTF3 24 110 108 CCDS HistoryNCBI Gene:1479Re-query CCDS DB by CCDS ID:44563.1Re-query CCDS DB by GeneID:1479See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44563.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438862.6 ENSP00000388711.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438862.6Link to Ensembl Protein Viewer:ENSP00000388711.2Re-query CCDS DB by Nucleotide ID:ENST00000438862Re-query CCDS DB by Protein ID:ENSP00000388711
Original member Current member NCBI NM_001033505.2 NP_001028677.1 Accepted alive Link to Nucleotide Sequence:NM_001033505.2Link to Protein Sequence:NP_001028677.1Re-query CCDS DB by Nucleotide ID:NM_001033505Re-query CCDS DB by Protein ID:NP_001028677Link to BLAST:NP_001028677.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028677.1 103 Q12996-2 103 100% 0 0

Chromosomal Locations for CCDS 44563.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 33141580 33141762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33141885 33141986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33161299 33161325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGTCAGGAGACGGAGCCACGGAGCAGGCAGCTGAGTATGTCCCAGAGAAGGTGAAGAAAGCGGAAAAGA
AATTAGAAGAGAATCCATATGACCTTGATGCTTGGAGCATTCTCATTCGAGAGGCACAGAATCAACCTAT
AGACAAAGCACGGAAGACTTATGAACGCCTTGTTGCCCAGTTCCCCAGTTCTGGCAGATTCTGGAAACTG
TACATTGAAGCAGAGGTTACTATTTTATTTTATTTTTTCTTATATCAGTATTGCAGCATTCACTGTAGTG
ATAGAAAACAAGTTAGGAACATAGCCAATTAG

Translation (103 aa):
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKL
YIEAEVTILFYFFLYQYCSIHCSDRKQVRNIAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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