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Report for CCDS37078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37078.1 Public Mus musculus 15 9130401M01Rik 23 108 98 CCDS HistoryNCBI Gene:75758Re-query CCDS DB by CCDS ID:37078.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37078.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100655.4 ENSMUSP00000098220.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100655.4Link to Ensembl Protein Viewer:ENSMUSP00000098220.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100655Re-query CCDS DB by Protein ID:ENSMUSP00000098220
Original member Current member NCBI NM_029418.4 NP_083694.1 Accepted alive Link to Nucleotide Sequence:NM_029418.4Link to Protein Sequence:NP_083694.1Re-query CCDS DB by Nucleotide ID:NM_029418Re-query CCDS DB by Protein ID:NP_083694Link to BLAST:NP_083694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083694.1 372 Q9D2X8 372 100% 0 0

Chromosomal Locations for CCDS 37078.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58022366 58022563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58025274 58025406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58028614 58029044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58030957 58031100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58031984 58032079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58034084 58034200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGAGACCGGATGCTGGGTGCTGGGCGGCGAATTTGAGGACTCGGTGTTCGAGCAGAGGCCGGAGCGCC
GGCCCGAGCCGCCCTCCCCCTACCGCGCCAAGCTCTGCGAGCCGCAGTGGTTTTATGAAGAGACAGAATG
TAGTGACGATATTGAAGTTCTCACTCTCAAGAAATTCAGAGGGGACCTGGCCTACAGACGACAGGAATAC
GAGAAAGCCCTGCAGGAATACTCCAGTATCTCCGAACAGTTACCATCTACTAATTTTGCCATGAAAAGGG
ATGTCCAAGAAGGCCAGGCTCGGTGTCTGGCTCACCTTGGGAGGCATGAGGAGGCGCTGGAGATGGCAGC
AGACCTGGAAAGCAAAGCCACCAACACAGACCATCTGACCGTGGTGCTCCACCTCCACCTGGCCGTCTTT
TCCAGCCTGCAGAGCCGGGAGCACACGATCCTCTGCCTGCACAAGCTGATTGCTTTGCACCCGCTCAACC
CGTGGAGCTGGTGTAAGCTGGCAGAGGCATACCTGAGTCCAGGGCCCGGCCTGCCAGCAGGCGTGTCACC
GCAGGGACAGAAGAGTTCTGCCTCAAGTGACAAGGCCGTCGGTCCCTCCTCTGTACACTCGGGAACAGGC
TCTCTTTTGTCTTTGCCCACGACCTTGCCTGAGAATGCACTGCTCTCCGTGGAAGCGAGTGGTAGTGCTC
AGGAGAATATGCCTTCCCTGGCAAGGCGGAGGGAAGAGGCACAGATGGAGGCTCGGAGGAAAGCATGCGC
CTCTCTGCTCCGCGCCAGGCTCCTGCTTCAGCTCGCCCAGTCTCAGCAAACATCATTCGCGTTGGAGAAG
AACTTGAGGACTCAGCAGGAAATTGCAGGGAAAGTGAAGGACTTCAACTTTAGGGAAGATACTTTGCTGT
TGATGGAGGAGGCTATGGGGGAAGACATTGTCCCAGAAAAGATAAAAGAGGAGCTTCATTCGGAGGTGAA
GTGTGTGGGCCCCGGAGCCCTGACTGCCATGGTGGTTGCGTCCTCCAAAGAGTTTGAAGACAAGTGGTTC
AGAAAGATCAAAGACCATTTCTGTCCCTTGGGAAATCAGTTCCACGTGGAGGTTGAGATCATCGCTTAG

Translation (372 aa):
METGCWVLGGEFEDSVFEQRPERRPEPPSPYRAKLCEPQWFYEETECSDDIEVLTLKKFRGDLAYRRQEY
EKALQEYSSISEQLPSTNFAMKRDVQEGQARCLAHLGRHEEALEMAADLESKATNTDHLTVVLHLHLAVF
SSLQSREHTILCLHKLIALHPLNPWSWCKLAEAYLSPGPGLPAGVSPQGQKSSASSDKAVGPSSVHSGTG
SLLSLPTTLPENALLSVEASGSAQENMPSLARRREEAQMEARRKACASLLRARLLLQLAQSQQTSFALEK
NLRTQQEIAGKVKDFNFREDTLLLMEEAMGEDIVPEKIKEELHSEVKCVGPGALTAMVVASSKEFEDKWF
RKIKDHFCPLGNQFHVEVEIIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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