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Report for CCDS38516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38516.1 Public Mus musculus 3 Lce1i 23 108 98 CCDS HistoryNCBI Gene:76585Re-query CCDS DB by CCDS ID:38516.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090866.1 ENSMUSP00000088379.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090866.1Link to Ensembl Protein Viewer:ENSMUSP00000088379.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000090866Re-query CCDS DB by Protein ID:ENSMUSP00000088379
Original member Current member NCBI NM_029667.2 NP_083943.1 Accepted alive Link to Nucleotide Sequence:NM_029667.2Link to Protein Sequence:NP_083943.1Re-query CCDS DB by Nucleotide ID:NM_029667Re-query CCDS DB by Protein ID:NP_083943Link to BLAST:NP_083943.1

Chromosomal Locations for CCDS 38516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92777418 92777867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGTCCTGCCAGCAGAGCCAGCAGCAGTGTCAGGCCCCAGCCAAGTGCCCTCCCAAGTGCCAGACCCCAA
AGTGCCCTCCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCTTGGG
TTCTGGGGGCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGTAGCTCTGGTGGCTGCTGTAGCTCTGGTGGC
TGCTGCAGTTCTGGGGGTGGAGGCTGCTGCCTGAGCCACCACAGACCCCGCAGATCCCTCCGTCGCCATC
GCCACAGCTCTGGATGCTGTAGCAGTGGTGGCAGCAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGTGG
CTGCTGTGGCAGTAGTGGTGGCAGTAGTGGCTGCTGTGGCAGCAGTGGTGGCAGTGGTGGCTGCTGTGGC
AGTAGCCAGCAGTCTGGGGGCTGCTGCTGA

Translation (149 aa):
MSCQQSQQQCQAPAKCPPKCQTPKCPPKCPPKCPPKCPPVSSCCSLGSGGCCGSSSGGCCSSGGCCSSGG
CCSSGGGGCCLSHHRPRRSLRRHRHSSGCCSSGGSSGCCGSSGGSSGCCGSSGGSSGCCGSSGGSGGCCG
SSQQSGGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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