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Report for CCDS17263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17263.1 Public Mus musculus 3 Cpb1 23 108 98 CCDS HistoryNCBI Gene:76703Re-query CCDS DB by CCDS ID:17263.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011607.5 ENSMUSP00000011607.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011607.5Link to Ensembl Protein Viewer:ENSMUSP00000011607.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000011607Re-query CCDS DB by Protein ID:ENSMUSP00000011607
Original member Current member NCBI NM_029706.2 NP_083982.1 Accepted alive Link to Nucleotide Sequence:NM_029706.2Link to Protein Sequence:NP_083982.1Re-query CCDS DB by Nucleotide ID:NM_029706Re-query CCDS DB by Protein ID:NP_083982Link to BLAST:NP_083982.1

Chromosomal Locations for CCDS 17263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 20249651 20249838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20251955 20252039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20262410 20262612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20263506 20263596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20263678 20263788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20265349 20265450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20266226 20266327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20266424 20266523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20270243 20270367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20275420 20275495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20275586 20275650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGTTGCTGCTACTGGCCCTGGTGAGTGTGGCCCTGGCTCATGCTTCTGAGGAGAACTTTGATGGCAACC
GGGTGTTCCGTGTCAGTGTACATGATGAAGATGACGTCAGCTTAATTCAGGAACTAGCCAACACCAAACA
GATTGATTTCTGGAAACCAGATTCTGCTACACAAGTGAAACCTCTTACTACAGTTGACTTTCATGTTAAA
GCAGAAGATGTCGTTGATGTGGAGAACTTTCTCGAGGAGAATGAAGTTCTCTATGAGGTATTGATAAGCA
ACGTGAAACATATTCTGGAATCCCAGTTTGACAGCCACACCCGTGCAAGTGGACACAGCTACACCAAGTA
CAACAACTGGGAAACGATAGAGGCATGGATTCAACAAGTTGCCAATGATAATCCAGACCTTGTTTCTAAG
AGAGTCATTGGAACCACATTTGAAGGACGTAACATGTATGTTCTCAAGATTGGCAAAGATAGACCAAATA
AGCCTGCCTTCTTCATCGACTGTGGTTTCCACGCAAGAGAGTGGATTTCTCCTGCATTCTGTCAGTGGTT
TGTGAGAGAGGCTGTCCGTACCTATAAACAAGAGATCCACATGAAACGACTTCTTGACGAACTGGACTTT
TATGTTCTGCCTGTGGTCAACATTGACGGCTATGTCTACACATGGGCTAAGGACCGAATGTGGAGAAAAA
CCCGCTCTACTACGGCTGGAAGTTCCTGCTTTGGTGTAGACCCCAACAGAAATTTTGATGCTGGCTGGTG
TGAAGTGGGAGCTTCTCGGAGTCCCTGCTCTGACACTTACTGTGGACCAACTCCAGAGTCAGAAAAAGAG
ACAAAGGCCCTGGCAGATTTCATCCGCCAGAACCTCTCCTCCATCAAGGCCTATCTGACCGTCCACTCCT
ACTCACAGATGATGCTCTATCCTTACTCCTACGACTATAAGCTGCCCGAGAACTATGAGGAGCTGAATGC
CCTGGTGAAAGGTGCAGCAAAGGAGCTTTCCACTCTGCATGGCACCAAGTACACATATGGCCCAGGAGCT
ACAACGATCTATCCTGCTGCTGGGGGATCTGACGACTGGGCTTATGATCAGGGAATCAAATATTCCTTTA
CCTTTGAACTCCGGGATAAAGGCTTCTTTGGCTTTCTGCTTCCTGAGTCTCAGATCCGCCAAACCTGTGA
GGAGACAATGCTTGCAGTCAAGTACATTGCCAATTATGTCCTAGAGCATCCATATTAG

Translation (415 aa):
MLLLLALVSVALAHASEENFDGNRVFRVSVHDEDDVSLIQELANTKQIDFWKPDSATQVKPLTTVDFHVK
AEDVVDVENFLEENEVLYEVLISNVKHILESQFDSHTRASGHSYTKYNNWETIEAWIQQVANDNPDLVSK
RVIGTTFEGRNMYVLKIGKDRPNKPAFFIDCGFHAREWISPAFCQWFVREAVRTYKQEIHMKRLLDELDF
YVLPVVNIDGYVYTWAKDRMWRKTRSTTAGSSCFGVDPNRNFDAGWCEVGASRSPCSDTYCGPTPESEKE
TKALADFIRQNLSSIKAYLTVHSYSQMMLYPYSYDYKLPENYEELNALVKGAAKELSTLHGTKYTYGPGA
TTIYPAAGGSDDWAYDQGIKYSFTFELRDKGFFGFLLPESQIRQTCEETMLAVKYIANYVLEHPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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