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Report for CCDS21238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21238.1 Under review, update Mus musculus 7 Slc6a21 23 108 98 CCDS HistoryNCBI Gene:76713Re-query CCDS DB by CCDS ID:21238.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 21238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085364.3 ENSMUSP00000082476.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085364.3Link to Ensembl Protein Viewer:ENSMUSP00000082476.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085364Re-query CCDS DB by Protein ID:ENSMUSP00000082476
Original member NCBI NM_001033176.1 NP_001028348.1 Updated not alive Link to Nucleotide Sequence:NM_001033176.1Link to Protein Sequence:NP_001028348.1Re-query CCDS DB by Nucleotide ID:NM_001033176Re-query CCDS DB by Protein ID:NP_001028348
Current member NCBI NM_001033176.2 NP_001028348.2 Pending alive Link to Nucleotide Sequence:NM_001033176.2Link to Protein Sequence:NP_001028348.2Re-query CCDS DB by Nucleotide ID:NM_001033176Re-query CCDS DB by Protein ID:NP_001028348Link to BLAST:NP_001028348.2

Chromosomal Locations for CCDS 21238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45282873 45282967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45286442 45286628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45286882 45287083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45287208 45287367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45287692 45287857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45288072 45288533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGTCAACCTGGCGACTTCGTTGCTGAGCTCATTCGTCATCTTCCTCGTGATGGGCTTCTGGACCACAA
CCAGCGGCACTATGTGTATTAAGAGGAGTGTCTCCAATCTGATCAACCTGATAGCCAACGGGGTCCTCCC
CAAGGCCGCCTGGCCTCCCGGAGACATCATCCATAAACCCCCACTGGAATACCTAGCCTGGATCAACCAG
CTTCCCAACAACTTAAAGAGTCAGGTCATCCATCAAACCCTGCCCTGCAGCATCCTGATACAAAAGGAAA
AGATTATGGAGGGCCCTGGCCTGTCGTATGTGGCCTTCTCTCAAGCCATCTCACTGTTTCCCGGCTCCTC
TTTCTGGGCCATCATCTTCTTCATGTCCCTGGCTATCATGGGTCTGGGCACCATGCTAACTCTCCTGGAG
GGCATCGTGCTTCCTCTGCAGAAAAGCATCTCTACCTTTGCAAAGCATCCCAATCTGGTACAAGTGCTTG
TCTGCTTGGGAGGATTTCTGGGGAGCCTCGTCTTCTCCAGCCGCCCTGGCAGCTACGTGGTATTCCTGTT
CGATGACCTCCTGGTCCCCATGGTGCTCATCATAATTGTGGTGATCCAGAACCTGTCTCTGGCTTGGCTC
TATGGAATCAAGAGGTTCAGGGCTGAGGTGTTCGGCCAGCTGGGCAGCCTGGTGTGGTCACCCTTCACCT
TCCTGTGGAGCTACGTGACGTTGCCCACACTGTTGGTCCTGCTCACCATCTACTTCCTGAATCTCTACTA
CAGTGGATCCCCCTACTATGTCTCCTGGAATGATAGCATGAGCCATGAAGTGAAGCAGCCTTACAAAAAG
ATACCCCTGGGCTGGGTCACCTTCCTCAGTGTCCTGGCACTGCTGCCGATCCTCGTGTACCCGCTGCAGC
ACTGGTGGTATCTGGATGACCCAAACATCTGTGAAACCTTAGAAAAGCCTCTGTCCTCCAAAAAGACAGT
CACGGTGCCCAACAGAGTCACCCAGTGGCCTGTGCACCCCATGAGGAAACTCACCCTCCGAAATCAGGAG
AAAAGCAAGGCTTTATTCCAAAGCAAGAGTCCCCCGGAGAACTTCCTTCACCCCCAGACCCTGATAACAA
AAAAGGACAGTGAGAACTATTCCACCTTCAGCTTGCCCGATGCCACGCTTCCTTCTCAGGTTGGCTTCTC
CACCTTGGCCATCCATGAGGTGTCAAAGTACACCGGCCACTCAGAATCCTTTTTGGACTCCCAAAACACT
GGAAAGAAGTGA

Translation (423 aa):
MVNLATSLLSSFVIFLVMGFWTTTSGTMCIKRSVSNLINLIANGVLPKAAWPPGDIIHKPPLEYLAWINQ
LPNNLKSQVIHQTLPCSILIQKEKIMEGPGLSYVAFSQAISLFPGSSFWAIIFFMSLAIMGLGTMLTLLE
GIVLPLQKSISTFAKHPNLVQVLVCLGGFLGSLVFSSRPGSYVVFLFDDLLVPMVLIIIVVIQNLSLAWL
YGIKRFRAEVFGQLGSLVWSPFTFLWSYVTLPTLLVLLTIYFLNLYYSGSPYYVSWNDSMSHEVKQPYKK
IPLGWVTFLSVLALLPILVYPLQHWWYLDDPNICETLEKPLSSKKTVTVPNRVTQWPVHPMRKLTLRNQE
KSKALFQSKSPPENFLHPQTLITKKDSENYSTFSLPDATLPSQVGFSTLAIHEVSKYTGHSESFLDSQNT
GKK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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