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Report for CCDS18877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18877.1 Public Mus musculus 4 Tmem82 23 108 98 CCDS HistoryNCBI Gene:213989Re-query CCDS DB by CCDS ID:18877.1Re-query CCDS DB by GeneID:213989See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053263.8 ENSMUSP00000058412.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053263.8Link to Ensembl Protein Viewer:ENSMUSP00000058412.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000053263Re-query CCDS DB by Protein ID:ENSMUSP00000058412
Original member Current member NCBI NM_145987.2 NP_666099.2 Accepted alive Link to Nucleotide Sequence:NM_145987.2Link to Protein Sequence:NP_666099.2Re-query CCDS DB by Nucleotide ID:NM_145987Re-query CCDS DB by Protein ID:NP_666099Link to BLAST:NP_666099.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666099.2 356 Q8R115 356 100% 0 0

Chromosomal Locations for CCDS 18877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141614581 141614706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141614945 141615135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141616204 141616621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141617295 141617469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141617640 141617712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141617899 141617986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGTTCTCCCTGCCTTCCCTCTCCTCCTGGCTCCCCAGCCTCCCTTCCTTTGAGTGGGGTTCCAGTCTCT
TCGACAGCCTTCTGCAAGGCTTGATCGGGGCCCTTGGAGTCTCGGTTCTCAACAGTCTCCTGAAAGTTTA
TTTCTTCGTGGCCTGTGTCAATGACCCCCAGCGGCAGCCCCAAAAGCAGCGGCTGAGCGCGCAATGGGCC
TCGTTGGAGATGCTGCATCTGGCTGGTCTGACCCTGTTCCTGACCTTGATAGGGTCCCGGGTAGCCGCCC
TCGTCGTCTTGGAGTTCTCGCTCCGGGCTGTGTCCACTCTGCTGTCTCTGGGCAAGGGTTCCGGGAACAA
GGAAAGGCTCCAGCTTTTCCTGGTGTGTCAGTTCTCCCTGGGCTGTGGGCTAAGCTGTGGCCTGAGCTTC
CTCCAGGAAGGTGCCCCACACCGCTCCCTGAACCTGCTGCTGAGCCTGGGGCTGGCTGTACTCCTTGCCC
TGGGTGCCCGGCGCCTAACCCGCCACATCTGCAGCCTCTATGAACTGCACAGCAGCCAGCGCTACTGTGG
GGTCTGCTTGGGCCTGCTGGCCAGCCAGCACGGCATGCCCAGGCTCCTGAGCCGCACTCTGACAGTGGCC
TTTGCTGTGAGTGATCTGGCGGCAGTGGCTCTCATCAACAAGGACTTCCTGAGCTCCTCAGAGGCCGTGC
GATTCTGGACCCCGCTCACCATCTGTTACACACTGTTGGTCATCTACATGCAGGAGGAGCAGTGGCAACA
TCGCTTCAGCCTACAGGGCCAGGTCCAGACGGTGCTGGTGCGCATGGGTGGCCTCTTCCTTCTGTTGATG
ACCGTGGGCCGCTGGCTGGATCTCCTGAGTATCTTTTTCTCCCTTTTGGGTGAGCTGTGGTGCTTAGCCG
GTATTCGCGCCTTAATCGACCTCTGCCAGATACAGGGCTTTCCACCCCAGAGGCCTACAGTAACAGCAGC
AGTAACAGCAGAAGGAGAATCAGGATGGACAGATCCATGTGAGCCCCGGCCTTCCACACCTGCCCCAGCC
AGGAGCGCGGTCCCCTCCTGA

Translation (356 aa):
MFSLPSLSSWLPSLPSFEWGSSLFDSLLQGLIGALGVSVLNSLLKVYFFVACVNDPQRQPQKQRLSAQWA
SLEMLHLAGLTLFLTLIGSRVAALVVLEFSLRAVSTLLSLGKGSGNKERLQLFLVCQFSLGCGLSCGLSF
LQEGAPHRSLNLLLSLGLAVLLALGARRLTRHICSLYELHSSQRYCGVCLGLLASQHGMPRLLSRTLTVA
FAVSDLAAVALINKDFLSSSEAVRFWTPLTICYTLLVIYMQEEQWQHRFSLQGQVQTVLVRMGGLFLLLM
TVGRWLDLLSIFFSLLGELWCLAGIRALIDLCQIQGFPPQRPTVTAAVTAEGESGWTDPCEPRPSTPAPA
RSAVPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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