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Report for CCDS441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
441.1 Public Homo sapiens 1 HPCAL4 24 110 108 CCDS HistoryNCBI Gene:51440Re-query CCDS DB by CCDS ID:441.1Re-query CCDS DB by GeneID:51440See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 441.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372844.8 ENSP00000361935.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372844.8Link to Ensembl Protein Viewer:ENSP00000361935.3Re-query CCDS DB by Nucleotide ID:ENST00000372844Re-query CCDS DB by Protein ID:ENSP00000361935
Original member Current member EBI ENST00000617690.2 ENSP00000481834.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617690.2Link to Ensembl Protein Viewer:ENSP00000481834.1Re-query CCDS DB by Nucleotide ID:ENST00000617690Re-query CCDS DB by Protein ID:ENSP00000481834
Original member Current member NCBI NM_001282396.2 NP_001269325.1 Accepted alive Link to Nucleotide Sequence:NM_001282396.2Link to Protein Sequence:NP_001269325.1Re-query CCDS DB by Nucleotide ID:NM_001282396Re-query CCDS DB by Protein ID:NP_001269325Link to BLAST:NP_001269325.1
Original member Current member NCBI NM_016257.4 NP_057341.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016257.4Link to Protein Sequence:NP_057341.1Re-query CCDS DB by Nucleotide ID:NM_016257Re-query CCDS DB by Protein ID:NP_057341Link to BLAST:NP_057341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269325.1 191 Q9UM19 191 100% 0 0
NP_057341.1 191 Q9UM19 191 100% 0 0

Chromosomal Locations for CCDS 441.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39682536 39682733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39683937 39684152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39684442 39684603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGGAAGACCAACAGCAAGCTGGCCCCCGAGGTGCTGGAGGACCTTGTTCAGAACACTGAGTTCAGCG
AGCAGGAGCTGAAGCAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCAGCGGCATCCTCAACCTGGAGGA
GTTTCAGCAGCTCTACATCAAGTTCTTCCCCTACGGCGACGCCTCCAAGTTCGCGCAGCACGCTTTCCGC
ACCTTCGACAAGAACGGCGACGGCACCATCGACTTCCGGGAGTTCATCTGCGCCCTGTCGGTCACCTCCC
GCGGCAGCTTCGAGCAGAAGCTCAACTGGGCCTTTGAGATGTACGACCTGGACGGCGACGGGCGCATCAC
GCGCCTGGAGATGCTGGAGATCATCGAGGCAATCTACAAGATGGTGGGCACCGTGATCATGATGCGCATG
AACCAGGACGGGCTCACGCCCCAGCAGCGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAGGACG
ACCAGATTACATTGGAGGAGTTCAAGGAGGCAGCCAAGAGTGACCCATCCATTGTGTTGCTGCTGCAGTG
TGACATGCAGAAGTAG

Translation (191 aa):
MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFR
TFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRM
NQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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