NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58529.1 Public Homo sapiens 17 RNF112 24 110 108 CCDS HistoryNCBI Gene:7732Re-query CCDS DB by CCDS ID:58529.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58529.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000461366.2 ENSP00000454919.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000461366.2Link to Ensembl Protein Viewer:ENSP00000454919.1Re-query CCDS DB by Nucleotide ID:ENST00000461366Re-query CCDS DB by Protein ID:ENSP00000454919
Original member Current member NCBI NM_007148.5 NP_009079.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007148.5Link to Protein Sequence:NP_009079.2Re-query CCDS DB by Nucleotide ID:NM_007148Re-query CCDS DB by Protein ID:NP_009079Link to BLAST:NP_009079.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009079.2 631 Q9ULX5-1 631 100% 0 0

Chromosomal Locations for CCDS 58529.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 19411409 19411462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19411630 19411670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19412498 19412783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19412938 19413144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19413280 19413411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19413577 19413681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19414095 19414145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19414449 19414505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19414586 19414660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19414770 19414887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19415038 19415207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19415286 19415339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19415518 19415592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19415705 19416175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGCCAAGGCCCGCCTTGTCAGTCACTTCCTTTTGTCATCGGCTTGGCAAACGGGAGAGAAAACAGAGCT
TCATGGGAAACAGCGGCAACAGTTGGTCCCATACACCTTTCCCCAAGTTGGAGCTAGGCCTGGGGCCCCA
GCCCATGGCGCCCCGGGAGCTCCCTACCTGCTCCATCTGCCTGGAGAGGTTGCGCGACCCCATCTCGCTG
GACTGTGGCCACGACTTCTGCATACGGTGCTTCAGCACACACCGTCTCCCGGGCTGTGAGCCGCCCTGCT
GTCCTGAGTGCCGGAAGATATGCAAGCAGAAGAGGGGCCTCCGGAGCCTGGGCGAGAAGATGAAGCTCCT
GCCGCAGCGGCCGCTGCCCCCTGCACTGCAGGAGACGTGTCCTGTGAGGGCGGAGCCGCTGCTGCTGGTT
CGCATCAATGCCTCTGGGGGCCTCATCCTTAGGATGGGGGCCATCAACCGCTGCCTGAAGCACCCTCTGG
CCAGGGACACCCCAGTCTGCCTCCTCGCTGTCCTGGGGGAGCAGCACTCAGGGAAGTCCTTCCTCCTCAA
CCATTTGCTTCAGGGCTTGCCGGGCCTGGAGTCTGGTGAGGGCGGCCGGCCAAGAGGAGGAGAGGCATCC
CTGCAGGGCTGCAGGTGGGGCGCCAATGGCCTCGCCAGGGGCATATGGATGTGGAGCCACCCCTTCTTGC
TGGGGAAAGAAGGGAAGAAGGTGGCGGTGTTCCTGGTGGACACAGGGGATGCCATGAGCCCTGAGCTGAG
CAGGGAAACAAGGATCAAGCTCTGTGCTCTCACCACGATGCTGAGCTCCTACCAGATCCTCAGCACCTCC
CAGGAGCTGAAGGATACAGACCTGGACTATCTGGAGATGTTTGTCCACGTGGCCGAGGTGATGGGCAAGC
ATTATGGGATGGTGCCAATCCAGCATCTGGACCTCTTAGTTCGTGACTCATCCCACCCCAACAAGGCAGG
GCAGGGGCATGTAGGCAACATCTTCCAGAGATTGTCTGGCAGATACCCCAAGGTGCAGGAGCTGCTGCAA
GGGAAGCGAGCCCGTTGCTGCCTCTTGCCTGCCCCAGGGAGGCGGCGGATGAACCAAGGCCATGCAAGCC
CTGGTGACACAGATGATGACTTCCGCCACCTTCTGGGGGCCTACGTCTCAGATGTGCTGAGTGCGGCCCC
CCAGCACGCTAAGAGCCGCTGCCAGGGGTACTGGAACGAGGGGCGCGCCGTGGCCAGGGGGGACAGACGC
CTACTCACGGGGCAGCAGCTAGCTCAGGAAATCAAGAACCTCTCAGGATGGATGGGGAGGACAGGGCCCG
GTTTCACCTCTCCGGATGAGATGGCTGCTCAGCTGCACGACCTGAGGAAGGTGGAAGCTGCCAAGAGGGA
GTTCGAGGAGTATGTGAGGCAGCAGGACGTAGCCACCAAGCGCATATTCTCTGCGCTGCGGGTCCTGCCA
GACACCATGCGGAACCTCCTCTCCACCCAGAAAGATGCCATTCTGGCCCGCCATGGTGTGGCCTTACTCT
GCAAGGGGAGAGATCAGACCTTGGAGGCACTGGAAGCTGAGCTGCAGGCCACGGCCAAGGCCTTCATGGA
CTCCTACACGATGCGCTTCTGTGGCCACCTAGCTGCTGTGGGGGGTGCTGTGGGGGCCGGGCTCATGGGC
CTGGCAGGGGGCGTGGTGGGTGCTGGCATGGCAGCAGCTGCACTGGCTGCAGAGGCTGGGATGGTGGCTG
CTGGAGCTGCCGTGGGGGCCACAGGGGCCGCTGTGGTTGGGGGTGGCGTGGGTGCTGGGTTGGCTGCCAC
AGTGGGCTGCATGGAGAAGGAGGAGGATGAGAGGCTTCTGGAAGGGGACCGAGAGCCCCTTCTCCAGGAA
GAGTAA

Translation (631 aa):
MPRPALSVTSFCHRLGKRERKQSFMGNSGNSWSHTPFPKLELGLGPQPMAPRELPTCSICLERLRDPISL
DCGHDFCIRCFSTHRLPGCEPPCCPECRKICKQKRGLRSLGEKMKLLPQRPLPPALQETCPVRAEPLLLV
RINASGGLILRMGAINRCLKHPLARDTPVCLLAVLGEQHSGKSFLLNHLLQGLPGLESGEGGRPRGGEAS
LQGCRWGANGLARGIWMWSHPFLLGKEGKKVAVFLVDTGDAMSPELSRETRIKLCALTTMLSSYQILSTS
QELKDTDLDYLEMFVHVAEVMGKHYGMVPIQHLDLLVRDSSHPNKAGQGHVGNIFQRLSGRYPKVQELLQ
GKRARCCLLPAPGRRRMNQGHASPGDTDDDFRHLLGAYVSDVLSAAPQHAKSRCQGYWNEGRAVARGDRR
LLTGQQLAQEIKNLSGWMGRTGPGFTSPDEMAAQLHDLRKVEAAKREFEEYVRQQDVATKRIFSALRVLP
DTMRNLLSTQKDAILARHGVALLCKGRDQTLEALEAELQATAKAFMDSYTMRFCGHLAAVGGAVGAGLMG
LAGGVVGAGMAAAALAAEAGMVAAGAAVGATGAAVVGGGVGAGLAATVGCMEKEEDERLLEGDREPLLQE
E


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH