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Report for CCDS7996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7996.1 Public Homo sapiens 11 TMEM109 24 110 108 CCDS HistoryNCBI Gene:79073Re-query CCDS DB by CCDS ID:7996.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7996.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000227525.8 ENSP00000227525.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000227525.8Link to Ensembl Protein Viewer:ENSP00000227525.3Re-query CCDS DB by Nucleotide ID:ENST00000227525Re-query CCDS DB by Protein ID:ENSP00000227525
Original member Current member EBI ENST00000536171.1 ENSP00000443990.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536171.1Link to Ensembl Protein Viewer:ENSP00000443990.1Re-query CCDS DB by Nucleotide ID:ENST00000536171Re-query CCDS DB by Protein ID:ENSP00000443990
Original member Current member NCBI NM_024092.3 NP_076997.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024092.3Link to Protein Sequence:NP_076997.1Re-query CCDS DB by Nucleotide ID:NM_024092Re-query CCDS DB by Protein ID:NP_076997Link to BLAST:NP_076997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076997.1 243 Q9BVC6 243 100% 0 0

Chromosomal Locations for CCDS 7996.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60919694 60919930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60920886 60920988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60921774 60922165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCAGCCTCCAGCATCAGTTCACCATGGGGAAAGCATGTGTTCAAAGCCATTCTGATGGTCCTAGTGG
CCCTTATCCTCCTCCACTCAGCATTGGCCCAGTCCCGTCGAGACTTTGCACCACCAGGCCAACAGAAGAG
AGAAGCCCCAGTTGATGTCTTGACCCAGATAGGTCGATCTGTGCGAGGGACACTGGATGCCTGGATTGGG
CCAGAGACCATGCACCTGGTGTCAGAGTCTTCGTCCCAAGTGTTGTGGGCCATCTCATCAGCCATTTCTG
TGGCCTTCTTTGCTCTGTCTGGGATCGCCGCACAGCTGCTGAATGCCTTGGGACTAGCTGGTGATTACCT
CGCCCAGGGCCTGAAGCTCAGCCCTGGCCAGGTCCAGACCTTCCTGCTGTGGGGAGCAGGGGCCCTGGTC
GTCTACTGGCTGCTGTCTCTGCTCCTCGGCTTGGTCTTGGCCTTGCTGGGGCGGATCCTGTGGGGCCTGA
AGCTTGTCATCTTCCTGGCCGGCTTCGTGGCCCTGATGAGGTCGGTGCCTGACCCTTCCACCCGGGCCCT
GCTACTCCTGGCCTTGCTGATCCTCTACGCCCTGCTGAGCCGGCTCACTGGCTCCCGAGCCTCTGGGGCC
CAACTCGAGGCCAAGGTGCGAGGGCTGGAACGCCAGGTGGAGGAGCTGCGCTGGCGCCAGAGGCGAGCGG
CCAAGGGGGCCCGCAGTGTGGAGGAGGAGTGA

Translation (243 aa):
MAASSISSPWGKHVFKAILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRSVRGTLDAWIG
PETMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQGLKLSPGQVQTFLLWGAGALV
VYWLLSLLLGLVLALLGRILWGLKLVIFLAGFVALMRSVPDPSTRALLLLALLILYALLSRLTGSRASGA
QLEAKVRGLERQVEELRWRQRRAAKGARSVEEE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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